Array 1 61570-62594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POOU01000100.1 Streptococcus suis strain 667 SS_0667_Contig100, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     61570	    36	 100.0	    30	....................................	ACAGCCCGTTATACAAATCATCAACCACCT	
     61636	    36	 100.0	    30	....................................	AGAGACCGCTAAGTTATTCGGTGGTCCAGG	
     61702	    36	 100.0	    30	....................................	GGTGATGAGAGGTATTTATCATACGGTTGA	
     61768	    36	 100.0	    30	....................................	TAAAACCATAGATGATATCAATACCAATAA	
     61834	    36	 100.0	    30	....................................	TAGTGGGCTTGCTTTAGCACATCTCGGATA	
     61900	    36	 100.0	    30	....................................	AATGGCTATGTTACAACAGAGGTGTTTACT	
     61966	    36	 100.0	    30	....................................	GGACAGAGATCAAGGATGCCAGAATCTTGT	
     62032	    36	 100.0	    30	....................................	ATAACTCTCATCAAAATAATCGTACCCAAA	
     62098	    36	 100.0	    30	....................................	AATGGCTGACAGACATCTGGACAGCTATCT	
     62164	    36	 100.0	    29	....................................	CTAAAGCTAATCCGATAAACAAACGTTTA 	
     62229	    36	 100.0	    30	....................................	CACGCCCCTCTTGCTCTTGCTATCACTGCT	
     62295	    36	 100.0	    30	....................................	CAAAGTATAGACCCATCCCGCATTCGAGTA	
     62361	    36	 100.0	    30	....................................	CACGGCAAAGCTCTACGGGAGCTTTCGGCG	
     62427	    36	 100.0	    30	....................................	TTCAACTTCATCAAGTTCAATGTGGAACGG	
     62493	    36	 100.0	    30	....................................	CGCGTCTTAATTTCCCATCGTCCACGCTCT	
     62559	    35	  88.9	     0	.........................A.-.A.....G	|                             	T [62592]
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.3	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                              	       

# Left flank :   GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG
# Right flank :  GCAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTACCATCCCCCTTTTCCATGATATACTATATGTAATCGTTTTATTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.80,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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