Array 1 206149-206515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRR010000003.1 Bartonella sp. W8125 NODE_3_length_555903_cov_271.549957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 206149 36 88.9 30 ACA..C.............................. TCCTGTTGAACCGCCTTGACAATATTTGAT 206215 36 100.0 32 .................................... TTGCTACATTGCAGCCAATTTCTTACGCCATT 206283 36 100.0 29 .................................... CTATTCTGTTGATGCAGAAGACCTCTTGT 206348 36 100.0 31 .................................... CGCGATTTGATAACGTCTCTTATCGCGTATT 206415 36 100.0 29 .................................... TACAGCGGTCGTTGGTAATGGCCTCAAAG 206480 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 6 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCCAAGGAAGTTTATGCCCATTTCGGCTTTCGCAAAGTGTTGATGGCAGGTTCTATCGTCTCGGCAATGTTTACCGCTTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAGGAAGACATCAGTCAGGCAACGCCGATTGCAGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCAAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTGGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTATCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTTCCTTAAGGCAAAAAATAGCGAAATTTTATCGTTCGGTATAACGACTTTACAGAAAATTTACATCAAACGTTGCCGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAGGAACGTTTTACCAGCGTTCTGTTACGGCTTGACCGCATTTTCTAATCTGTTACAACAGCACCGCCAGTGAGCATGAAATTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 207493-207859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRR010000003.1 Bartonella sp. W8125 NODE_3_length_555903_cov_271.549957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 207493 36 94.4 30 ...A..........A..................... CCCGATGATACGTCGAAAAGGTAAAGATGG 207559 36 100.0 31 .................................... AAGGCCGGTATGAAGCCCACCCCTTCCCAGA 207626 36 100.0 30 .................................... CAATAGCCCAGAATTCTTAGCACAATATGT 207692 36 100.0 30 .................................... TGCGCGCTGCAAAGTTGCTTCGCAACCCTT 207758 36 97.2 30 ..............T..................... GCGCCGACCGTTATGACAGAACCATGTATT 207824 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ACCGCCAGTGAGCATGAAATTGTTCCAGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCCTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAATGCTGTTTTCCATTAAAATAACACCGATAAATTTCGATTTTTTTAACGTGTCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCTACCCTTGAAAAAATATCGAACTTTCAACATTCGGCATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAATTTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGTATTATGAAGTAAGTAAAGATTGAGTATAGGGACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCCTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTATCTTCCAAGCTTTTCCGTAAAAATCCAACCATTTTCAAATGGCTTGCCAATTCAGAACGGTGGTTAGTCTCTCACCGCTTGAACACGTTCTGTAATTGGCATTTGGTAACAACTAATAACCTATAATCAGGCCTTATCGTCCAACTATTCCGGAAATCACTCACATGCCCCATGAAATCGGAAAATTTATAATGATGAGCGAGCATCAAGGCAAAAAACGGATAACCAACATTCGATACAGAAGAAACCTGCCGCAAGCCACGACAATTCACAACGTATAAAACAAACAAATCCCGATAAAATCAGCAAAAGAATTATATCACAGAAAGGGAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 209696-210116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRR010000003.1 Bartonella sp. W8125 NODE_3_length_555903_cov_271.549957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 209696 36 86.1 19 CC.........................C.A.G.... TATCAATATTTGCGATTTT Deletion [209751] 209751 36 100.0 29 .................................... AAGCCAGAACAGCTTCAATGCATATTCGT 209816 36 100.0 29 .................................... TGTCCATGTCGAAAGCTTTGACGTATTCG 209881 36 100.0 31 .................................... CAAGCTTGAACACGTGTGTATCATCGCCAAA 209948 36 97.2 30 ...............A.................... GCGGCGTCGCAGTCTAGGAAAAGCTCATGT 210014 36 100.0 31 .................................... TCAAGAAAGATGGTGAACGCGCAGGTCTTCT 210081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.6 28 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TCACATCCATTTTGTTCCTCCCCTTGCAATGCAACACCGGTTGAACATTTACACACACTAGCGTTGCTGCTTGACCCCATTTCCTATTCTAATATAATTTAACCATCATAGTAATATTGGCTTTAAATCGGGGTAACCAATGAAAAACTTATCGTATTTCTTTTAACAATCTCTTTTATAACAACATATTCCGTTATAATTACCGGTTTTGGAAAGTCAGAAAAACAAAAGCAAGAAGAAGCCGCAAAAGCGTTTTTATCGGTTAAACCCCGCAATGCCCCAAACAAGAGCTACTAAAAATGTTACTGTTTCGTTTTCTTGATCCATTATTCTTAATCTTGAACATGTTCGCTGTGTTTATGTGGGGATTATATTTGCTTAATCCGTTTTTTGCATTTGTTCCATTCCACGTTGATACAGCGCCGATTGCCCTTACTTTTTGGTTAATTGTATATATCGCCGTTAAACGCTACTTCCGTCGCAAGCGTTGGATGAAATAA # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAAGATTAAGTGGATATTTTTTTGTAAAAAATGCTGTTTTTCATTAAAATAACAACGGTAAATTTCGATTTTTTTGACGTATCTTCCACGTTTTGTCCGAAAATCTAACATTATTTTCACATAAGCACACGATCAATTGGCGTGACCCACCCTTGAAAAAATATCGAACTTTCATCGTTCGATATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTTCAAGAAAAATATAATATAATTGAAAAATAAAATCAACAACCGGCATAGTGAAAGAAGTAAAGATTGAGTATAGATACGTTTTACCAGGGTTCTGTTACGCCTTGACCGCATTTTCTAATCTGTTACAACTTTTAATAGATTGGACAGTCGGTAAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 210554-211248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRR010000003.1 Bartonella sp. W8125 NODE_3_length_555903_cov_271.549957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 210554 36 94.4 30 ...A..C............................. TTTTAATAGATTGGACAGTCGGTAAGGTGT 210620 36 100.0 30 .................................... AATGTTCGAGATGTCAGACGTGAAAAAGCT 210686 36 100.0 29 .................................... GCACTCGAATTGTATTACCAGGACATTAT 210751 36 100.0 30 .................................... CCCTATACGACCAAATAACGTACCGTCTGA 210817 36 100.0 30 .................................... CACGATCCAGATGGATTACACCTTCGGCCT 210883 36 94.4 30 ...A...........T.................... AAAACATACTCATTACTCATTTGTTTTTCT 210949 36 100.0 30 .................................... TCGCGCACCGGCAGATTTGCGCCTTCCGGG 211015 36 100.0 30 .................................... TCGCAAAATCGTTGGCTGGTCGGCTGCATT 211081 36 100.0 30 .................................... TTCAGTTTTTGGCGACCATGGTACGGCAGG 211147 36 100.0 30 .................................... ATTCGTTAACACTACTGCATCAACATCGCA 211213 36 97.2 0 .............................G...... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GAAAGATGGTGAACGCGCAGGTCTTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAAGATTAAGTGGATATTTTTTTGTAAAAAATGCTGTTTTTCATTAAAATAACAACGGTAAATTTCGATTTTTTTGACGTATCTTCCACGTTTTGTCCGAAAATCTAACATTATTTTCACATAAGCACACGATCAATTGGCGTGACCCACCCTTGAAAAAATATCGAACTTTCATCGTTCGATATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTTCAAGAAAAATATAATATAATTGAAAAATAAAATCAACAACCGGCATAGTGAAAGAAGTAAAGATTGAGTATAGATACGTTTTACCAGGGTTCT # Right flank : CTGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTCTTTAACGTGTCTTCCACGTTTTACCTGAAAATCTAACAATTTTTTCACATAAGCACACGATCAATTTGCTTGTCCGGTAAGGCAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGTTGCGATTTTACCAACACAGGATCAGCCGACATTTTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGTGAACTGCTGTTTCGATTTTTTAGGAAAGCTTTCCGTTGTTACAACGCTTGTGAATGCGCCGTTCTGCTTAATAAGAAGCCCGCTTTGATAAAGCGGACTTTAAGACAGCGTGATAAACCGTAAGACAGCGTGATAAACCGGTTTGTCACATCCGGTTTGCTGTTGCCAATTTTTAAGCGTTGCTAAAACTGAACGAGCCTGCCCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 252152-252385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRR010000003.1 Bartonella sp. W8125 NODE_3_length_555903_cov_271.549957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 252152 36 88.9 30 ACA..C.............................. GAGGCAGCATATTACAGGCTGCTCGCGGGT 252218 36 100.0 30 .................................... TCATTCGACCCGCGCTTTCCGGAAGATTTG 252284 36 100.0 30 .................................... AGTTGCAAAAAACAAATGAAGATTATGTAA 252350 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTCCAACTCTGCCCACTTTTCAAGCCGCTCTTCAACTGTCCATTTTACTGCCAGTGCAATCATTGAAGTAAGTTTCATTTTGGTGCCTCTTGTAACTCTTGCCAAAATTCTCTCTTAAGAAGAAGATATGAAACATTTTTATTATTGTAAATTATTTTTATTATAAATTTAATATTTTTTATTGTTAATGAATAATTTTCTCAACTGTAACGCCCGTTTTACGCTTTACGTCTACAATGGCCGCAGTAAAGTTTCTTGCTTGTTTTCTATTTTCTGTTTTTTGTTCAAGCCATGAATTTATCAAATCGCGTGTGCATTCAAGATGATATTCTTTCATCCAATCTGATGAGTACTCATTAGAAATACCGTTTGATACCAATTTGATAATATCGCGTTTGATGTCTTCATCTTCCGCACATTGCCACGTGATGCGGGACATGCTTTGAACGAAAAGGGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACTCCTTGTTTTATAAGGTTTAAGTGGACATTTTTTTAAAAAAAATGCTGTTTTTCGTTAAAATAACACCAGTTGAGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGACGTTTCCTCGTTCAGGCAAGGAGCATTCGATCTTCGTGACATAAGATTCAAATTGTTCTTTTCCGTTACAGAAACGCAGATAGTTCGAGAACTCGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTGTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGTTCAAGATAGGCTGTCATAATTGTCATCTTCTCCCCACGCCTCATCAATTTGAACCGAACTGTTTTCCAAAGAAAAAATTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //