Array 1 3635-4658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXP010000131.1 Nguyenibacter vanlangensis strain LMG 31431 contig00131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3635 32 100.0 35 ................................ GCGGCCTTGAACGTCATGGTCACGACAACCTGACC 3702 32 100.0 35 ................................ CTGGCCGTTAATGGGGTCGAAAACCATGACGAATC 3769 32 100.0 34 ................................ ATCGAAGAATGTGCAGCGATACTGACACGCAGCT 3835 32 100.0 34 ................................ CGCCAAGATATCGCGGGGACCGACAATCATCCCG 3901 32 100.0 34 ................................ ACTTGCCTCGACAGGCGTGCCGATGTCGCGGATG 3967 32 100.0 35 ................................ AGGCGATGATCGCGCAGGGCAAGACGCTCGGGCAG 4034 32 100.0 33 ................................ CGGATGTGCTCAAGGGCCTGATCACAGCCGAGG 4099 32 100.0 33 ................................ CTCCCCGGCCTGAAGGCCGAGGCTTCCAGCGCG 4164 32 100.0 34 ................................ CAGCCCCGCCGGCCCGGGAGGCGCTCGCGTACGG 4230 32 100.0 36 ................................ CGTCGCGTTTGACGGTCAACGCAACCCGATACGACC 4298 32 100.0 33 ................................ CCGTGGATAGGTCGCCCCCGTCTGTCCCCTTGA 4363 32 100.0 34 ................................ CAGACATATCCGGCGCCGTGGTTATCGGTCGCGG 4429 32 100.0 34 ................................ CGGATGGCACCGTGATCCTGACCGGTCCCGGATT 4495 32 100.0 34 ................................ ATGTCATACGCGCCTAATTCGTGGGAAAAATACG 4561 32 100.0 34 ................................ CATGGCGGGGATCTGGCTTTCCCGCCACTCGACG 4627 32 68.8 0 ..T..G.....CGT.GA....C....C..G.. | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.0 34 GTCGCTCTCCGTACGAGAGCGTGGATTGAAAC # Left flank : ACCCCGCCTTCATCTGGAAATGACCGATGCTTGTCCTGATCACCTATGACGTAAATACCGAAGATGCAGCAGGCCGGCGTCGGTTGCGGCGGGTGGCGCGCGCCTGTCTCGATTTCGGGCAGCGCGTGCAGCATTCCGTCTTCGAATGCGATGTCGACCCGGCACGCTGGGCGGAACTGCGTGCCCGCCTGATTGCGGAGGCCGATACGGCGAAGGACAGCCTGCGCTTCTATCAGCTTGGGGCGAAGGGCAGGCAGCGGATCGAGCATGTCGGGGCCAAGCCCGTTCTGGACCTGGACGGGCCGCTGCTGTTCTGAAGTGCGCGCGAACCACAAGCGATCACGCCGGACCGGGTCGGTTCGCGCGGCCGGAATACTTTTTGCGATCAATGCTTTACTGATATGAACGCGCTCGCCCGTCTCGCCAGGGGACTAACCGCCATGCATTTCGCGCAAATGTTCCGTTTTTATAAGACCGAACAAGATGATAGCATAAAGGGT # Right flank : CGCGCCTGTTCCATCTATGGCTACGTGATCGGCGGGGCCGCCAGCCGCCCTTATCCGTCCAATGATTGCAGGTCGAAGAGGCGGCGATACAGGCCGCCTTCGCGCGCGATCAGTTGGGCGTGGGAGCCGTCCTCGCGCAGTTCGCCGTGGGCGAAGACCAGGATGCGGTCCAGCCCGACGACGGTGGACAGGCGGTGGGCGATCACCAGCACCGTCCGGCCGATCATCAGCCGTTCCATCGCGTCCTGCACCAGGATCTCGGATTCCGAATCCAGGCTGGACGTGGCCTCGTCGAAGATCAGGATCGGGGCGTCGGCCAGGAAGGCGCGGGCGATGGCCACGCGCTGGCGTTCGCCGCCCGACAGCTTGACCCCGCGTTCGCCCACCATGGTGGCATAGCCCTTGGGCAGGCGGCCGATGAAGCCGGCGGCATTGGCCTGGCGTGCCGCTTCCTCGATCTCGGCCATTGAGGCGCCGGGCCGGCCATAGGCGATGTTTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTACGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 6344-6859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXP010000018.1 Nguyenibacter vanlangensis strain LMG 31431 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6344 29 100.0 32 ............................. GTGTCCTGGACCTCGAGTACGGGCGCCGGCGC 6405 29 100.0 32 ............................. ACGTCGATCTCGTCCACGACGACGCCGCCGAT 6466 29 100.0 32 ............................. GACGGCGCGTCCAGAATGCCCAGGTCCATCTT 6527 29 96.6 32 .........A................... TCGATGTCTGACGCGGCGATGCTAATGGCCAT 6588 29 100.0 32 ............................. GAAACCGTGTTCGGAGCGCTGGCGCTGCTACG 6649 29 100.0 32 ............................. GAGCGTGGCCATTCCCATCCCAATCACTGATG 6710 29 96.6 32 ....................A........ ACCTGCTGGCTCGCTTGCATCATCGCCCTGCG 6771 27 89.7 32 ..........--................A AATGAGGCCGCGCAGCGCCGCGCATCCGCCGT 6830 29 75.9 0 C........A...AT..A.A......T.. | T [6854] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : TTGCCGCCTGCCGGCCGCCACCTGGGCTCGAGGCCGCGGCGGCAGCCGCGCGCGCGGGTTGGTCGCGCTGGGAACGTGATGCTGAAAGAAACGTTCTGCTTCTCGTGCTCCAGAAATCGGAAACCGGCTGGCGCGGCACCGGGCGGACCGAAGCGGAGCACGAGGTTGTAATCGGATACGACCGGATTTACGGACTGGACATTACTCCCGCCCAGGCGGGATGAACCGTTGTGCTAAGGGATCTGTTGTCCAAACGGTTGTCATTTCCCCGCAAACGCGGGGACCTCCCGTGGCCCACGACATTTGGGGCCGCCCCGGCACGCTCCAGTTGACGGTAGTGGCGTCCATCTGGTCTCGTCCGAATCGGCAATTCCCTCTCCCTTTGGCCCAGTCTGCCGCCACGTCAACCGGCAACAAAATGCCGCCAAGAATGCCGGCCTCCGCTCGGTAGGATCTTTGACAATAAAATGGCCCATTGATATCAACGCGTTCCACGAAGA # Right flank : GGAAGGGTAGGTAGGCAACAGGGATAGTCTCCGCACGGTAGGCTCAACCATCCGATAGGTCCATAATGTTCTTTCTTTGTTCGACTTTCCTGCGGCGATAATTTTAATTTTATGTTGTGATAAGGAATAAAGACTCCCCCTGAACCCAAAACCATGACACACAGAAAAAACCACCTCGAACCATCAGCCCGCCACGTCGCCAATGCACCCTTCCTGCCTCAATCTCGTCACCGACCCATGGCTGCCAGTGCACCGCCGATCCGGTATGTCCGCTACCATCCGCCCTGCGCAGATCGTCGAGGACATCGCGACCGATCCGGTCGTGGCAATCGACTGGCCGCGGGCGGATTTCCGGATTGCATCGCTGGAATACGTGATCGGTTTGCTGGCGACGGCATGTCCGCCTCGGGATCAGGATGCCTGGATCGAGAGGTGGGAGGAGCCACCTTCGGTCGCGGAACTCGACGCCGCCTTCGCGCCCGTGGCCGATGCCTTCCGGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13231-13869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXP010000018.1 Nguyenibacter vanlangensis strain LMG 31431 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13231 29 100.0 33 ............................. CCGACTTATGTTGCTGACAGCGCATATGCTAGC 13293 29 100.0 32 ............................. CCTTTCCGGCTTGGCAGGACGATCCAGCCGAT 13354 29 100.0 32 ............................. AGTCCGTGGTCGAGGCATTTTCCCTCAAGAGC 13415 29 100.0 32 ............................. AGGCAGGGAGGAAAGCGCGGTACTGGTGGAGA 13476 29 100.0 32 ............................. AGCTGGCGACCGAGTTTTATACCCGGTGGGAT 13537 29 96.6 32 ............................A ACCCGCTCCGCATCGGCGGCCTTTCGAAAGGC 13598 29 100.0 32 ............................. TTGCAGAAATGTCACGGTGCGCCATGCCGCGA 13659 29 100.0 32 ............................. AGGATGCTGGCACGGAAGCCGCGCAAGGATTG 13720 29 100.0 32 ............................. ACGATCAACCTGCCCGATATCGTCGCCCCGCA 13781 29 100.0 32 ............................. GGGCAGAGCGCGGTCGAGGGTTTCTCGACGAT 13842 28 82.8 0 ............C.G......-C...G.. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : GGTCCTGGCCGCAGGTGGCCTGGAAATGCCCCCGATCCAGGAGGAGGCCATGCCCGTGGCATTCCAGGACGCGAAAGGGTTGGGCGATGCTGGTCATCGTGGTTGAAAACGCGCCTCCGCGTCTGCGGGGGCGGCTGGCCGTCTGGCTGCTGGAAGTTCGCGCCGGCGTCTATGTCGGCAATTACGGCCGGCGCGTCCGCGAAATGATCTGGGGACAGGTATGCGCCTATATCGAGGACGGCAACGCCGTCATTGCCTGGGCAGCCCCCAGCGATGCCGGTTTCGCGTTCGATACCTGCGGCCGAAACCGGCGTGTTCCGGTTGAATTCGACGGCTTCCGACTGGTTTCATTCACTCCCGAGGCCGCCCTTCCGGCCCAACCCGGACCGGCCGCCGCCACCCCGCCCCGCCGCAGGGGCCGCGGCTGACAAAACCGCCTTTCAGCCGGTAGGATCTTTGACAATGAAATAATGATTTGAGATCAATGCCTTCCAGGAAGA # Right flank : GGCCAGCCTCCCCCATGATCGTCGGTATCGCAGTGGAAATCTTCGCCTGGACAGGCTACGTTTGTTTGGCATGCCGGAGAAACGGTGATATTCTCCCTGCCGTAGGACGTTTCTTTGTGGACGGTTCGTATGGGGTTCTGCGGGAGGCCCCGCCGGCACACATCGTCAATTACGCCAATGGCATCTCACAATCTGACAGCTAGCCTGGCTTTCTTAAGCCACGACCGAGAGCCGTCTTGACCCTTGCTCTCCGGTACATTCTACTTGCAAGATGACACCGAAACGTAATTATCGAGAAAGCCTCGGCGTTCTTGGCAACGGTAATTTCGTAGTATTCCTCACCGCTACGTTCCTATCCAATATGGGGAGTGCTCTGGTCCCGGTAGCATTATCTTTCGCCCTGTTCGCCAAGGGGGCCGGGGCAGGGGGTGTGAGCGCGGTGCTCTCTGCCGAAATTCTTCCAATGGCGTTGCTGTTGCTGTTCGGAGGAGTCCTTGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6466-4912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXP010000037.1 Nguyenibacter vanlangensis strain LMG 31431 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6465 32 100.0 35 ................................ CTGCCCGGCTCCTGGAAATCAATGCGCCCGAGATC 6398 32 100.0 35 ................................ TCGGGTCCGTCGCGTCAATCTGTTCTCGCGCCCTG 6331 32 100.0 34 ................................ TTCGGCGCTGTCGGCCTCGATCTGCATCGCGGCT 6265 32 100.0 35 ................................ TTGACGACGTGCACACGGCCCCGACCGGATTTCGC 6198 32 100.0 35 ................................ ACCGTGCATCGCCAGAAGGGCACGGCCTATGCGGT 6131 32 100.0 34 ................................ GTATCGAACATGACAGTCGCCCGGCGGTATGGTG 6065 32 100.0 33 ................................ CGTCCATCCAACAGCGCGCGGACCATCGGAGCC 6000 32 100.0 33 ................................ CCATCGACGACCTGAACCGCATCGGCGTACAGG 5935 32 100.0 32 ................................ TATGGGTGTAACGGGTCGACCGCTAGAAAAGA 5871 32 100.0 36 ................................ ACCCCCGGTGCCCGCGGCAACGGCATCCATCCGACG 5803 32 100.0 34 ................................ CCAGCAAGGACGGGCCGACTGCACCCAGTTCAAG 5737 32 100.0 35 ................................ ACGCACATCTTTATTCAGTTCTGAATAAAATTCCC 5670 32 100.0 34 ................................ CAAGCGACTCGGCTGCCATGATGACGGGTTGCGC 5604 32 100.0 33 ................................ GCTCGTATGCGACGCATCCGGACGTTTATAACC 5539 32 100.0 35 ................................ GCTTGCTCGGCAATATATCTGTCAGAATCGAAACG 5472 32 100.0 33 ................................ ATCTCCGCGACGTGTTTGGTGTTACCTTGATGA 5407 32 100.0 34 ................................ ATGGTCCATTGCGGGATGGACGAGGGGACCGCTG 5341 32 100.0 34 ................................ TGGCGCGACTCGGACTGGCCGGGGCGGTATCACG 5275 32 100.0 35 ................................ CCCGGATCGTAGTTCGTCAGGCCGTAAGCGAATTC 5208 32 100.0 35 ................................ AGGTATGCAGCATCGACACCCTGAAATCCCTGCTG 5141 32 100.0 33 ................................ CGGGCTGCTGGCACTGAACGGTGCATGTGACGG 5076 32 100.0 34 ................................ CGCGTCATCCGCGAACACGACATCCAGCCCCGCC 5010 32 100.0 35 ................................ ATCGATGAGGCGTCGGATCGCGAAGATCAGCGCGG 4943 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 100.0 34 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : CATGCCCTGGCGTTTCATGACATCGCGCCGAAGGCACCGGTGCATGTGCTGATTATTCCCAAGGGGGCGTATGTCTCCTTCGCGGATTTCAGCAGCACGGCCAGCGATGCCGAGATCGCGGGCTTTACCCGTGCGGTAGGGCAGGTAGCTTCGCTGCTGGGACTGGAGGATGCGGGGTATCGCCTATTGTCGAACATGGGGGTGGCGGCCGGTCAGGAAGTGCCGCATTTCCACATCCACCTGTTCGGCGGCGCCGCGCTGGGGCCGATGCTGCATCGTCACTAGGCCGGTCGGGAGACCAGATCCCACCGCCATCCCGGCGCGCGAACCATAAGCTGTCGGAAAAAACCCGGCCGGTTCGCGCACGGCTAAAACGCATACGAACCAACAGCTTGGCCGAGAGCACCCAACCCGTTTCCTTCCGCCGCCGGCAATCCGGCCGAACGTTCGCGGAATAGAAGGGTTTTTCCTTGGTAAGGCAATATGATAGCTGGTACGGC # Right flank : ACGAACAGGTCCCAGGCCCGCTGACTACCATTCGGCCGCTCTTCGCGGAAGCGTGGGGTGAAACCAGACGTTAGTGGATTAAGGCAGAGGCTATCATGCCGGCCCAGGTGGAGATCTAGGCAAAGCCGGATCAGCGAAATGGATGCTGCGGCGGGTGTGACTGAATCTTCACATAAAATTTATGCAACTCCGCCGAGAAAACGTACGGCGCGTTGATCTGGCGCATCGCCAACCCGGGTAGATGCCTTCATCCTGCGATACATGGACCTGTTCGCGCATTCGCTACCCGATGACCCGGACCCACGACGGTGGGAACCGTTGATCGACCATCTGGCTGATGTCGGCGGCCTGGCGGAATCGTTCGCCACGCCGTTCGGCGCCGCATTGTTTGGCCGAGTGGTCGGGTTGTTGCACGATATCGGGAAATGTTCGGCCGCGTATCAGCATTATATCCGAATGGCGGGCGCGCGCGGCCCCGACCACAGCACGGCCGGCGCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //