Array 1 421-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLWF02000113.1 Roseomonas mucosa strain AU37 contig00113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 420 32 100.0 36 ................................ TCGGGCGTCATGGCGTAGGACGTGCGACCCACCGGC 352 32 100.0 35 ................................ ATCTTCGATGACACGCTGAACCTCGGTGTCTCGGG 285 32 100.0 35 ................................ ATCCACACCAATCCGTGCCAGGGCTGGTGTAGGCC 218 32 100.0 35 ................................ ACCGGCATCGAGATCGACCAGTCCTATTTTGACAC 151 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 36 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : TGGAAGTAGGCCAAAGCCATGCTCATGCTCATCACCTATGATGTCAGCACCGTGACGCCAGCGGGACGTCGCAGGTTGAGACGTGTGGCTCGTGCCTGTCTCGACCATGGCCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAAGTTGACCCGGCACAGTGGACCGCGCTACGCGCGCGTCTGATGGCCGAGGTTGATCTGGAGCAGGACAGCCTGCGTTTCTACCGCCTCGGCGCTTCGGGCAGAGCCCGGGTGGAACATATGGGTGCAAAGCCCGTTCTGGATCTGGAAGGACCATTGGTCTTCTGAGATGACGCAATTTGCGCGATCCGGTAGCGACCATGCCGTGGCGTGGTGGCTCGCGGAGCGCTGAACTCATTGAAAACAGAAGAAGAGTTTGTATAAGCGGAAAGACGCTGCCGGACCGACCTAGGCTTCCACCCTGGTTCGCGACGAGTGGCGGGCAAACCATGGAGCTTTCACAAAAAAAAGTGCCGGGA # Right flank : CTCCGCGTCGGCCGGCGGCGAGGCGGACGGCTGCGTCGCTCCCCGGTAAGCGCGGCGTGACCACCCTTCTTGATCTGGTCCACTGAGCCCGCGAGGTAGGTCGTCGCGGAGGTGTGGCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12999-14919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLWF02000083.1 Roseomonas mucosa strain AU37 contig00083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12999 29 100.0 32 ............................. TCACGCAGGCCGAAATAGGGCGGGCTGGTTAC 13060 29 96.6 32 ............................C GATTCGCCGGGTTCATCCATGTCCCCGGCCAG 13121 29 100.0 32 ............................. ACGCATGTCCTGACCTGGGACACCTTCGCCTA 13182 29 100.0 32 ............................. ACGAGGAGGTGTATTCCTCCCGGCCGCGCGGC 13243 29 100.0 32 ............................. TCGGCGGCGACCTTTCGGAGCCCGGCGGCCAG 13304 29 100.0 32 ............................. TCCGCCCGTAAGCTGGCGCAGGCCAGCCCTGC 13365 29 100.0 32 ............................. CCGGCAATCGTCTTCCCGTATCTCCATCGCGG 13426 29 100.0 32 ............................. GTCCGGTCCTTCCTTGATGAATTGGACCCGAC 13487 29 100.0 32 ............................. CGGAGATGGTTCAGCTTGCCGCCCACGCCCCC 13548 29 96.6 32 ............................C GGCGCGGATTTCGCGCCGCGCGCTGGCGGAGT 13609 29 100.0 32 ............................. AGGTCCAGGCTCCCCAGGAACTGATCCCGATA 13670 29 100.0 32 ............................. ACGGCGGGCCGCGCGGCGGATACAGCAACCCC 13731 29 100.0 32 ............................. TTCGGGGAGCAGATCAATCTGGAGCGGGCTCT 13792 29 100.0 32 ............................. AGCAACTTGGCCGATACGCGGGAGGTGGCGCG 13853 29 100.0 32 ............................. CCCTGCGGTAACTGCTCTTTCACCAAAGTAAA 13914 29 100.0 32 ............................. ATGGACGTGGGCACGGCGGCCCTGACCGGCGT 13975 29 100.0 32 ............................. TCGGTGGCGGTGCGGAACCTGCTGGGGCGGCT 14036 29 100.0 32 ............................. GCAGTCAAGGCTGCCGCTCAGGCTTGGGGCGG 14097 29 100.0 32 ............................. TCGCGCGGGTGCCGCAGGTAGGAGGACAACGC 14158 29 100.0 32 ............................. GCGTCAAACTCTATCCCCTGCTGGATGTAGGC 14219 29 100.0 32 ............................. CCGCCCAGGACGGGACCGAGGTCGCGGCGGTG 14280 29 100.0 32 ............................. GAGGCGAGGCGGCGTTCTCCGATGGGGATGAC 14341 29 100.0 32 ............................. CCTTTCGTCACGACCAACGGCGGCTTGCTGAC 14402 29 100.0 32 ............................. GGTGCGCCCCAAACCGGGTTCAGCTATGGCTT 14463 29 100.0 32 ............................. GGGCCAGGGTTACAGGCCCCGGCCCCTCCATC 14524 29 100.0 32 ............................. GTTTTGAGGGTGTTGTGGCCGGTGCTGTTCGG 14585 29 100.0 32 ............................. GACCCGCAGCGGCTGACGAACAAGATGCTCAG 14646 29 100.0 32 ............................. GCGAAGGAGGCGACCGAGCGCGCCCGGACCCA 14707 29 100.0 32 ............................. GACTGCTCCAGGATGTCCACGGGGGCGCGGGT 14768 29 100.0 32 ............................. GCCCCTCCGCTTCTCGATGTCTCCCATTCGCT 14829 29 100.0 32 ............................. GGAGCCACCATTCCGGGGGATGCCGCCTCCAA 14890 29 96.6 0 .........................C... | C [14913] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : GTGCTGGGAAAGCTGATCCCTCTCATCGAAGAGGTTCTTGCAGCCGGAGGCCTGCCACTGCCGGCCGCACCCGAGGAAGCGATGCCCGTGGCTTTTGAAGCTCCGCCGGGATTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCGCGCCTGCGGGGAAGGCTGGCGGTCTGGCTCTTGGAGATCCGGGCCGGGGTCTATGTCGGCACCTATGGCCGACGTGTGCGGGAAATGATCTGGGAGCAGGTGCAGGCGGGGATCGAGGAGGGCAACGCCGTCATGGCCTGGGCCGCCCCAACCGATGCTGGTTTCCTGTTCGAGACCTGTGGACGAAATCGGCGTGTGCCGACCGACATGGACGGGTTCCGGCTGGTCGCCTTTGGCCCGGAAGCGGCATACTCTGCCCTGCCACCCATGTCTGACCAGAACAGACGTTCCAGGCGGTAGCCTCTTTCACAGCAGAATAAGATCGCCGAAACAGCCACTTACAGGAAGA # Right flank : GCCGCGATCTGTGGGTGTCGTGTGACGCCTAGGCTTCTCACCGAGCGTCGCAATAGCGCCTACAAGAACAACAGCCTCGAGCAGGACCACCGCGGCCTCAAAGGTCGGATCCGATGTATGCGCGGCTTCAAAAGCTTCGCCTCGGCTGAGCGGTTCTGCCGAGGCTACAACGAACTACGCAATCATCTCCGCCTCCGCTCCCGACACAATCAGCATGTCTCCGCTGATCGCCGTCGGGCGGCCGCTGCGCTAGTCATCCTACAATCTGCATAGGCCGGTCACGTCACGCCGTACACCGTGTCCGCTACGGCGCGAGCGCTGACAGAACCGTTCTCGGTCATGCGAGCCCCCTGCCCTGCCCCCACTCCGCCAACGGAATGAGCATGGTCGCCAACGCCGGATCGGGGTGGCGACCCATATCCCGTGCGAACGGGCCATCGGCCGCCACGACACCCCGGGCACCCATGGCGACGGCGAAAGCCACGTAGAGGGTGTCATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73-4219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLWF02000139.1 Roseomonas mucosa strain AU37 contig00139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 73 32 93.8 35 TA.............................. ATCATGATGTGGGCGTGCGAATTGCCATGCGCTTG 140 32 100.0 35 ................................ TACCGGCTCACGTCACCCCAGAGCGGATGCTGAAG 207 32 100.0 35 ................................ TGGTTGAGAGGCCCCTTATCTCTGGGTTCAACGCA 274 32 100.0 34 ................................ GAGCCTGCTTGGATATACGCTGGCAGCAGACAAC 340 32 100.0 35 ................................ CCGGCGTGGTGGTTTGCCCAGCATCCGCAGTCGGC 407 32 100.0 35 ................................ TTAGAGCGGATTGAGGATATGGCAAAAGCCGCCCT 474 32 100.0 36 ................................ TCCGCCCTCTACCAGCAACGCCCCGCCCCCGAGACC 542 32 100.0 35 ................................ CAAATCACTTGGGAGAACAACCGAGGCAGCCGCAA 609 32 100.0 35 ................................ CCGCGTGGCTATCCGTTGCCTGAACAGCGCCAGTG 676 32 96.9 35 ....................A........... AACGCCTCGGGCCGTCTGGTCTCATTCACCGGGGC 743 32 100.0 34 ................................ TCGCTACAGATGCGGACGCCTGAGGGCACATCCC 809 32 100.0 34 ................................ AAGAGCAGCGGAGTTGAATTCTGGGATGAGGCAA 875 32 100.0 34 ................................ TGGAATTGAAGATCCAGGCCGACAAGCACAACAA 941 32 100.0 35 ................................ GGTTTGCTGACGGCGTGCGCCGGGCTGTCCAGGAT 1008 32 100.0 34 ................................ TGGGGCTTTTGTCTCAGCCCGGCCTGCTTTCCCA 1074 32 100.0 35 ................................ TCTGGAGGGTTAGATGGCCGCAAGGCTGAACCCCC 1141 32 100.0 34 ................................ CAGCCTTCCGCGACCCGGATGGTGCTGGCCAACC 1207 32 100.0 33 ................................ AACTCGTCCACCGCTATTTGCAGCCGAGCCGCC 1272 32 100.0 34 ................................ ACCTCAAGAAAGGTCGCCCCGTGCCTCATGGCCT 1338 32 100.0 34 ................................ CATCGCCGCCGCCTCCACCACCTCAATCGCAGTG 1404 32 100.0 35 ................................ TATGAGCGTCGCCGCTTCTGGTTCACGGATCAGCG 1471 32 100.0 34 ................................ CGGCAATGCACCGTCCTTAAACCCGAGAGCCTGC 1537 32 100.0 34 ................................ ATGGTGCCTCGGGAAAGCGTCGCCGAAGTTTGGC 1603 32 100.0 35 ................................ ACCGCACCCGAGCGCGCCGCGGCGTTCTCGAACTG 1670 32 100.0 35 ................................ ATCAGCGCCCGGAGCTGCATCTCCTCGACCTCGAC 1737 32 100.0 34 ................................ TGCGCGTAGGGGTCACGCGGCCGGTCGGGGCCGT 1803 32 100.0 35 ................................ CATTTGAGCACGCCGGTCTCAGCGTCATACGCGAG 1870 32 100.0 34 ................................ ACGTAGCCAATGGGGCTCTCTGCGCGGGCGGCGG 1936 32 100.0 34 ................................ CTCGAAGCGAATGGTAGGGCGTGAGCCATCGGTG 2002 32 100.0 34 ................................ CGGATAGGGATTGAAATCGTCGGACTGATTGTGC 2068 32 100.0 36 ................................ CGATCGACCGGGGACCCCTGCGCGGCGGCCGAGGTC 2136 32 100.0 33 ................................ CGCACGATGCTGGTGCCAGGGAGCTGGGCACGG 2201 32 100.0 35 ................................ GCGGGCATCGGGATATGGTCGCTCGCCCTCCGAAG 2268 32 100.0 34 ................................ TCCATGCCTAGGGGTATGCCCATGCCACCCGCCC 2334 32 100.0 34 ................................ CGGCTATCGATGGTGCCGCCAGCGAGGTTCAGAT 2400 32 100.0 37 ................................ TTCTCTGGCTTGTGGAGGAAGGGGACGATGTTGAAGC 2469 32 100.0 34 ................................ ACGTCCGGCGTTCAGAACGAGATCCGGGACACCC 2535 32 100.0 35 ................................ ACGGCCTCCAGGCGGTCGGTGGTGGGAGCGTGGAT 2602 32 100.0 34 ................................ CTGATGCTTGGCGCCATTGACGACGGCACCGGTC 2668 32 100.0 34 ................................ CGCAGATCCGTCTCGGCCTGGCTTGCCGCCACGT 2734 32 100.0 34 ................................ TGCGGGTGCATTGGAGCTCACAGGGCATCATCGG 2800 32 100.0 35 ................................ CGCTTGAACTGCCGTCCGTGCTCCGAACCCATGGC 2867 32 100.0 36 ................................ ACCGCAGCGCCGAAGGCGTGGTTGAAGTGGTCCTCC 2935 32 100.0 34 ................................ TGCGTCCTGGCGAGCCTGGATATGGCGGCATCGC 3001 32 100.0 34 ................................ CGCCTCGGAGCGGGTGGGTGCGCCTCGGTGCCGT 3067 32 100.0 34 ................................ CAGGGCATGAGCCGCGAGCAGGCCATGTCGATGC 3133 32 100.0 33 ................................ CTGGAGAGCATCGGATGAGCGAGACGACGGATA 3198 32 100.0 33 ................................ ATCGTCGGACAGAGGCTCCACCGCCTGCTGCCC 3263 32 100.0 33 ................................ GCCTGCAACGGCCAGGCGAGGCGCCGCATGGCC 3328 32 100.0 35 ................................ CAGCAGGTGCTGGAGCGCGGCGCGGAGGGAGAGGC 3395 32 100.0 33 ................................ CTCCGGAACGCCACCGAGCCGCTGGCCGGTCAC 3460 32 100.0 34 ................................ GGCTCCTTCCTGCCGACGCACCTGCCGGACCCGG 3526 32 100.0 34 ................................ GCGTCCTGTCGGGGCCCGTTGGCGATGTGCAGGC 3592 32 100.0 33 ................................ CGGGAGCCCGAGAGCGCGCAAGACCCGGGCTTG 3657 32 100.0 34 ................................ ATGAGGGGCCGATCCCTCTTCGCGGGGCCGATCT 3723 32 100.0 35 ................................ GCGTCGCGCAAATCCTTGCCGAACAGGAGACGGAA 3790 32 100.0 36 ................................ ACGTCCGGTTTCTCCCCCTCGGCTGACGGGTCACAG 3858 32 100.0 35 ................................ GTGTGGGGCGCTCTGGCGTTCCCCATCGGGCCGCA 3925 32 100.0 34 ................................ GTGCCAACCTGCGAGATGAGGGCGTGCTCGCGGC 3991 32 96.9 34 .........T...................... GCCAGGGCGGTGGAGACGGTGGCGGGCATCTCCT 4057 32 96.9 32 .........T...................... CTGCGCAAGCCGGGCAAGCGCGGCGCGCCGTA 4121 32 100.0 35 ................................ CGCTTCAAGCACGGGCGCAACGCGGACGTGTCCAA 4188 32 96.9 0 ........T....................... | ========== ====== ====== ====== ================================ ===================================== ================== 63 32 99.7 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CATGCCCTGGTGCTGGACCGCCGACGCAGGCTGACCCTCAGGTCAAACCGCCAAGGGCTTGTTGGCCTCGCTT # Right flank : CGCTATCAGTAGAGCGGCCCTAAGTAGTCGGCCTTGAATAGCTTGTCAGTGCGTTCGGCCAGCCGCTGGATAGGGGCTGGTCTAGGTGAGCGCCTGAACGAGACTGGCGAACAGGGCGAGCAAGAAAGCCCGGAGGTGGGCAAGGATCTTGCGGATGTTGTGGCCGCAGCCGCAGAGCACGGCGAACAGGGCATCGCCGAAGGTGCCCTTGAGGGCACAGCGGGCGAGACGGCCGTCGGTCTTCAGGTGGCCGATCTCAGGCTCGATGGCGCTGCGACGGCGCAGCAGCCTGATAAGCCTTGGTGTCAGCCGGCGGCGGGTGCCGCTGACCAACACCTGCGTGCCCCACACGCCATGGCCGCGGTAGCCGCGATCGGCCACGACGGTACTGGGATGATGGCTGGTGAGGGTCTCGACCTGCTCGAGGGCGTCAGCGAGGGTGTGGCCGTCATAGGGATTGCCGGGCATGGAGCGCATGCCGACGACGAAGCCGCCCTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //