Array 1 1426965-1427421 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1426965 29 93.1 32 .............G..............C TCATCACCGACCACTAGGAGTTCCAGTCATGC 1427026 29 96.6 32 .............G............... TACTCGGTGAGCGCGTGCTCGATCACCAGCTG 1427087 29 96.6 32 .............G............... GTCGGGATGAAACGCCACCCAGGCTGGGGTGT 1427148 29 93.1 32 .............G..............T ACGGATGTGCTCGATGACGGGCGTGCCACTGG 1427209 29 93.1 32 .............G..............C TGGACGGCGTCGCCCGCGTCGGGACGCCTCGG 1427270 29 100.0 32 ............................. GTGCTCACCTCCCCAGGTTGTCATCCACCTGA 1427331 29 100.0 32 ............................. TGGAACGGTTCGACCAGGGGCAACGGCAACTC 1427392 29 100.0 0 ............................. | C [1427397] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTCCGCCCCGCGCATGCGGGGATGAACCG # Left flank : GCACGGTCCTGTTCTACGCTGCGTGTGCGTTGTGGCCTTGGCGACCCCGTAGACGTCCGCCGCTTCATGGAAGCACTCCATGGTGTTATTCGGATCGACCACTCGCCAGTTCTCCCGCTACGAGGTGTGAAGTGCCCCCCTGCTAAAGATGTTGCTAAGCCCTCGGTCACGCACTACTTACCGGCGTCGAACTTGACAACACCGGATCGTATACCTGCTGCGGTATATGCCAAGAGAAGCCGACTTCGCGCCAGCGGCCAACTGCTCAGCGTTGCCGGAAGCCCTCTTGACTCACTCGACTGGCACTGATTTTGACCGGCCGGTGCGTCGCGCTAAATACCCCACCCTGGCCGCATGCGAGGCCGCCTTTGGCGCCGGTCACCATCGCTGATGCTGATACTGCCCACCACTCGTCTTCTCTTGGATAGTCTCTGCGTCATAAGGCGCTCAGAGTGAATGAAAAACGGGTCGCCAGGCGGTAAACATGCAGGTCACGAAGT # Right flank : GCTGCCAGGTACTCGACAAGGGCCTACTGGGTTCTGCCTGTGCACGCAGAAATGAATCATCAACATGGGCAGTGTGTTTTCGGGGAACGTTCACCTCGGTGCGTAGGGGCTGAACGCAATGTCACCCGCCTGTGGGTTGGCGAGCACGTCTGTCCCACAGATGCAGGACCAATCGCTACCGCTGTCTGATTCATGAGTGCGGGAATGTGTCGATCGTGCCTCTAGACCGTCAGAACCGTTAGTTGGGTTGGGTAGGGAGGTAGTGACCTGGGGCTCGATATTGGTTCATGCATCGGACATCACGCTGGACAACGACACTCTCCTCGAGCTGGCGAACCGTGGTCGAGTAGATCGCGGCTGGATGGTGCGTGCTGGCAGCTGGGCGATGGATTCTGGGATATGACCGAAAACTGCGTCGGGACGGTCACTGAGGCCATTACGATCACACAGTCAGAGGATGACTTGGCTTGGCTGCCTTGCTTAGTTCCGCACGACTGATG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : GTCCGCCCCGCGCATGCGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1434700-1434972 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1434700 29 100.0 32 ............................. AACTTCAAGGCGGTGTCACCGGCGGAGATCAT 1434761 29 96.6 32 ............................C TTCCCGGCGGTGTAGGACTTGCCCGTCCCTGC 1434822 29 100.0 32 ............................. TTGTGCGAGACGTCTAATTCGGAGAGTCCCGG 1434883 29 100.0 32 ............................. ACAGTCGTGCTGCACACCCGCCACATCAAAAA 1434944 29 79.3 0 ......................CATCA.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCCGCCCCGCGCATGCGGGGATGAACCG # Left flank : CTCCGACCGATTCTACATGTCCGACGCCGCGTACACGGTCGCCATCACCGGACCCGACACGCTCCTCTACCGAGTAGACGACGCGCTCCGCGCGCCGGTGTTCGGCCCGTTCCTCGGTCGCCGGTCCTGCCCGCCCGCAGGGCCGTGGCATCTCGGCCTCCATGACGGTGATCCGTTACGAACACTGCCACTACACAGGGACAAACCCCGCGACGGTGACACCGTGGCTGTGGAGTTCGTGTCCGACCACGAAACACACGGCCCCACGGATCGAGTGGACACCACACTCACGGATCCACACGAATTCGGCCCCCGCCGCTCGTACGGGACCGTCACCACCCACCGTTGGACCGAAACCCTGCCTGTCGCTATGTGTGGCGGAACCGGGATCCAGTGGTTCGACGCACTCACCACTGTTTGACACGAGTGATCCGCTGATTGACAACTCCATACTGAATGCAAATCGGGTTACCGTCCGGTAGAACCGCTGGTCAACAAGT # Right flank : AGAAAGGAGAACGCTATGCCCACCTACCTCACCAAAATCACCACACCAAAATCCGTCACCCGCGACATCCACCGCACCCACAAAATCCTCACCACCGCCGTCTGCCCACCCAACATCACCACTCCAGGCCGCGTCGCAACCCGCCTCTTGCATCGAGTCGAGCGGGGTGGACGCGAAATCCTGGCTCAATCAGCAACACCACTCGATCCGACACGTCTCGAGGGCGGTTGCGTCATCGCCGGAACAAAACTCCTGGATCCACTGCTGGACCACCTCGACAACGGAACTGTGGTGCGGTACAAGATCACCGCCAACCCCGTCCATGCGCCCAACCGTGTGAGACGTCCGATCACCGATCCTGACCGGATCCTCGCCTGGTGGCATCGCACCGCTGATCGCATCGGTCTCGTACTGGACTCCACGGCACTCCTCGACACCGCGAAGACAAGCGGTATGCGGCGGGACCAGAGGGTTGTGGTGCAGACCGCCACCATGGAGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1435658-1436237 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 1435658 29 100.0 32 ............................. CCCATCAGCATCGACTGGGGCGAGCCGTTCAC 1435719 29 100.0 32 ............................. ACCCTGCCGGGGGTTCCGCTGGACGACTACGC 1435780 29 100.0 32 ............................. TATTGTTGGGGTTGTCACGGAGCCCAACACAG 1435841 29 96.6 32 ............................C CTGGAAGGGACGGTGGTGGGGTGCCGCCGTCT 1435902 29 100.0 32 ............................. TCACCGCCGTGGGCGGCTGCGCTCGGCCGATC 1435963 29 100.0 32 ............................. TCGCTGATCTTGAGGGTGCCGCGCAGAATGTC 1436024 29 100.0 32 ............................. CGGATCAAGCGGCTGGAGTCGCGGCTGGTGCT 1436085 29 96.6 94 ............................T GGGGAGCAGCTCACGCACGGCACATTTTGTGTCTGCTCTTACCACACAGGTGGGATGTGCCGGACACTACCACTCGAAATGTTGTCGAGGCAGC 1436208 29 75.9 0 ..T.....T...T.......A....G.TT | A [1436225] ========== ====== ====== ====== ============================= ============================================================================================== ================== 9 29 96.6 40 GTCTGCCCCGCGCATGCGGGGATGAACCG # Left flank : CAATCAGCAACACCACTCGATCCGACACGTCTCGAGGGCGGTTGCGTCATCGCCGGAACAAAACTCCTGGATCCACTGCTGGACCACCTCGACAACGGAACTGTGGTGCGGTACAAGATCACCGCCAACCCCGTCCATGCGCCCAACCGTGTGAGACGTCCGATCACCGATCCTGACCGGATCCTCGCCTGGTGGCATCGCACCGCTGATCGCATCGGTCTCGTACTGGACTCCACGGCACTCCTCGACACCGCGAAGACAAGCGGTATGCGGCGGGACCAGAGGGTTGTGGTGCAGACCGCCACCATGGAGGGGGTCGCCACGATCCGCGATGTCGACACAGTTCGGGACGCCATAGTGCTCGGTGTTGGGCATGCGCGCGCGTATGGCTGTGGGCTGCTGTCTGTTGTCCCCCTTGAATAGGATCCTGAGATGTCGCGCACAACTTCAGAGTGAATGTGAATCGGGTTACTCCTCGGTAGAACCGCAGGTCAGGAAGT # Right flank : TTGCGGCGGAAGCGGAAGGGGACGGGAGCGCCGAGATGTTCGCATGTGTGGAATACCCTCGCTTTTAGGAACAAATATTCATGCAGTAGATTATGCGATCTTCTCAACCTTCAGAAGGTGGAAGATGTTCAGCGCTGGCCTTCATGACCTCGTAGCGGCCGTTCGGGGATATCAGTGGAGCATCTCGTGGTCACGGTAATCAGGAATGATCGTCGGCAAATCCAGTCCTGGAATGCCGTCATCCGCGCCGCGCGCGGCAATGGTGTCGATGCCATCGAAGATGGATGAAGAACAAGAGAAAAGCGCCGGTTCTTGTGGCGATGATTCCAAATCCAAGGACGGCGATAGAACCTCGGTGGCGTGGTTCACGGAGATGTCGATCTTCTTCCCAGCAATGGTGTTGGCTGGGATTAGCGATGTCGAAGTGCTAGCCAGTGCACCTGGGAGCTCTGTTGCTCGTCCGGGTGAAGTTTGTTTCGAGAGTGAGAAAGCGTTAGCGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1764627-1762887 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1764626 29 100.0 32 ............................. TCTGGGCGGCTGCCGATGGTCGTGCTCGTGGC 1764565 29 100.0 32 ............................. GGCGGCACGCCGGGGCCCGCTGTACGTGTGAC 1764504 29 100.0 32 ............................. TACTCGCCGACAGCCTCCAGAGTGGGGGCGGT 1764443 29 100.0 32 ............................. TGGCGCACCCGAGATGGTGTCGCCCTCGAAAC 1764382 29 100.0 32 ............................. ACAGTGGGGCGGCAGACGCTGGCGAGCCCCGA 1764321 29 100.0 32 ............................. GCACTCAACGACATCCACGGCCACCGTTTCGG 1764260 29 100.0 32 ............................. GCTGCCAGAGGCGATCTGAGGGCCGGAAATCC 1764199 29 100.0 32 ............................. AACCACGACCGGGACGGCCAGGATGCCGAGCG 1764138 29 100.0 32 ............................. TACAACCGGCCGTACGTAGCGGTCGTGCCTGC 1764077 29 100.0 32 ............................. ACCCCCCGAGAGCTGGTCGGGGGGTCTTTTTG 1764016 29 100.0 32 ............................. GCCGGTGTCCTGATGGTGTATGCGGAGCGTGT 1763955 29 100.0 32 ............................. CAAGCCCGCGCCCCGTCCGGCCAACCCCTGCT 1763894 29 100.0 32 ............................. CAGCGGCAGCAACGCGCCGAGCGGGACGAGGC 1763833 29 100.0 32 ............................. AACAGCTCGCCAGGGTGGTCTCTCCTCACGGC 1763772 29 100.0 32 ............................. GATTTACGGAGTTCTCGGGCGACCGCGCCGTC 1763711 29 100.0 32 ............................. AACAGGAGCGGAAGGTTGCCGAAGCAGCCGAA 1763650 29 100.0 32 ............................. ACACGCTGCCGGGGGTTGGCAGCGCCTGCCGA 1763589 29 100.0 32 ............................. AGCGTTGACTAGCGGTGAAATCCACCACCAGT 1763528 29 100.0 33 ............................. CCCGGACCGCGCCGCGCGGGCCCAGCGCTCGAC 1763466 29 100.0 32 ............................. ACCGAGTCACTCGGATGGGGCGCCGGGAACGA 1763405 29 100.0 32 ............................. GGGGCGCGGCGGCCTGCGGCAATCTCCAGGTA 1763344 29 100.0 32 ............................. GACGCCGCCGACGCCGCGATACCGGTGGCCGC 1763283 29 100.0 32 ............................. AATGGCGCTCGACATGCTCGGGGCCGCCCGGG 1763222 29 100.0 32 ............................. AATGGCGCTCGACATGCTCGGGGCCGCCCGGG 1763161 29 100.0 32 ............................. ATCTCGTCTTGTTCCTCAGGCGTTAGCGAGTC 1763100 29 100.0 33 ............................. GGCGTCTACCGCGCCAAACACCTGTAGCCCATC 1763038 29 100.0 32 ............................. GTGGCCTTAAAAGCCGCCCGTAGACAGCTTCA 1762977 29 100.0 32 ............................. CCCGCGAGCAACGCCTCGATCGGCCTGAAGAC 1762916 29 93.1 0 ........................A...C | T [1762889] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCGGAAGCCATATGTGGGAAGCCTCCTCATGCCTGCACCGCCGTCCTGTCGAATCCGGCAGATATCCTTCCGGGACACCGACCTGCTCCTGGAATCCCGGGGTCAGTTTGCCGACGTCATGCGCAGCGGCCCAGAACTCCAGGACACGGCACGTCTGCTCCTCGGTCAAGCCCACGGCTTCGGCCAACCCCGCCCGAACACGCGCGGACAGGTATCGCTTCCACAACCAGCGCACCGCAGCAGCCGCATCGAGGCCATGGCATACCAGCGGGTACCGAGCCCCCTCCAGCCCCCGTTCTTTCCCCCAGAAACGGAGATCGACCAGCAACACATCCCCCAGAGCAAGCTCTACACTCAAACCTGCACGAACACAGTCCCGCTGCGTTCGTGCCGACACGGTAGCGATCCACACCGACAAAATTGAGCAGATGCACCCCACCCCTTCGACGACACGCGACAAAAACGTGCAAACGACGAACTAAAGTCGCAGGTCACGAAGG # Right flank : CCGTGATGTAGCGGTCAGGGGATCCCACTTCACAACAGATGGTCAAGAACTTCAGCGTCACGGTCACCTTCTCCACAAGCTGACGTAGTTATCCCTCAAACCAGCAGGAATCAGGGCGGGCGCGGCAACTGCGATCAGAGTGACAACACCTGGTCCGGCTGATGTCGGTCGCGAAGCCTCGGCATCCATCGACAACGATGGGTGATACAAATTCCATCAACTCTGCTTGGCCGGCGTGTTCGTACGGGGATCAGTTGCGTTTCCGATCGATGCGTCGTCATGCTCAAGCTTCAGCCGCACCCATTACTCCGCGGAACAGACGGTGAGCGCGAAGCGGATCGAGTTCCGTGGCGTGATTGTTCGTATAGATCCGTGAGGGCATTTCGGCACTCTTGAAGAATCAGCTGTACGTTCCTTGCCGGTTTCGACACCACATCCGCTTCTCTTCCCGAACCGAGCCCCACCGCCCTGTTCAGGACTCGCCGTGGTGTTGGAGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1774013-1775934 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1774013 29 96.6 32 ............................A GAGGGGGCGGGAAGAACCTCTTCCGAGCCCTC 1774074 29 100.0 32 ............................. GCCCTGACGGCGCGCCGATACTGGCCCGCGAA 1774135 29 100.0 32 ............................. AACGGCCAGTACCAGGCCTCCGACCCCTCGCC 1774196 29 96.6 33 ............................A GTAGGTGGTAGCCGTGTTGTTTGAGGTAGTGGG 1774258 29 96.6 32 ............................T GTTTCGTTCGGGGTCAGCGTTGCCCTGCTGCC 1774319 29 100.0 32 ............................. TCGATGTGTGGGCGCCGAGTGAACGTGGGGTC 1774380 29 100.0 32 ............................. ACCTGGTCAGGCGCACGTTGGCCGAGACGCAG 1774441 29 100.0 32 ............................. GGCCAGCCCTGCCACGCCGACGAGTGGCTGGC 1774502 29 100.0 32 ............................. GAAGAGCGCCCACGGCGGAGCCCACAGCGGAA 1774563 29 100.0 32 ............................. CATTTTTCGTAGCGCATTCCCGATCGACTGCC 1774624 29 100.0 32 ............................. CGCGGTCGGATCACGGTGCCTTCCAGTCGCAC 1774685 29 100.0 32 ............................. AGCTGTTCGCGGCGGTCCTAACCTTCGCCGCC 1774746 29 100.0 33 ............................. CCCATTCCGTACTGTTGGACCAGGCGCCGCTGC 1774808 29 100.0 32 ............................. GCCACGACCTCAGCCGTGGCTTACCTGCGCGG 1774869 29 100.0 32 ............................. ATCGCAGCCGAGGGCGTGGACCGAGGTGACCG 1774930 29 100.0 32 ............................. GACGGCAAGATCGTGGAGCTCAACGACGTGGG 1774991 29 100.0 32 ............................. GCAGGCGCGGCTGGGAGGGACGGCTGGCGTGC 1775052 29 100.0 32 ............................. CCTCGCGGGCCAGCTGCTCGGCGCGCTCCACC 1775113 29 100.0 32 ............................. TCACAGACTCCGGCAGTCACTGACTCTGTCGA 1775174 29 100.0 32 ............................. TGACCAGTGGTCTACCTACCAGCGGTGGCGCC 1775235 29 100.0 32 ............................. GCGACTGATCTGCTGCGCCGCGTGTACTCCGC 1775296 29 100.0 32 ............................. AGGATCGTTTGATGCGCGGGCTGATCGTGTAC 1775357 29 100.0 32 ............................. ACGTCCACGTCGGCACTGCCCGAATGCGCCAC 1775418 29 100.0 32 ............................. GGGTGGGTTGAGATCAACGCGTGACGCGTGAC 1775479 29 100.0 32 ............................. GATGACGTCGCCGTTGTCGTCTACGAGGACAG 1775540 29 100.0 32 ............................. CTGGAGCACATCCGACAGGGGACCCACAGCGA 1775601 29 100.0 32 ............................. CCGAATCCCGCGATCTCTGACCCTGCCAACGC 1775662 29 100.0 32 ............................. GCCCTGTCCAGGGTGAAATGTACGCGTCGCGC 1775723 29 100.0 32 ............................. GTCCGCTACGCCTGTGAGCACGTGCCGGAGCC 1775784 29 100.0 32 ............................. CGGCGTAGCCGCTGGTCAGAGCTGCACAAAAG 1775845 29 100.0 32 ............................. GAGGCCGCGAAATGGCGGGGCACCCTGGAAAG 1775906 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.6 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GACGTCCAGCGACTCCTCGACCCTTCCATCGCCCAGGATCACGACGAGACGGGAGAGCCGGAGGAAGTCGAGCTCGTGCATTTGTGGGACCCTGATCTCGGTGCGGTCGAAGCCGGGGTCAACCATGGCTGGGACTGGGAGGATTGAGCCTGATGCCCAATCTTGTCGTGATCTCCACGACCGCTGTGCCGGATTATGTGCGCGGTTCATTGAGCCGCTGGTTGACCGAGCCGGCTCCCGGTCTCTACGTCGGGTCGATATCCGCTCGGGTGCGTGACTCTCTGTGGGAGCAGGTCAGCGCGGCCGTCGGAGAGGGGGCCGCGGTGTGCGTTCACCCCACCGACAACGAGCAACGCTACGTCATCAAGACCGCAGGCGAACGACGCCGCCGAGTCATGGACTTCGACGGCCTGCAACTCATCGCCTTCCGTGACCTGAACCCGCTGGGGCAAGGGAACCAGAACGAACAACCGCCCTTCTAAAACCGCAGGTCGTGAAGG # Right flank : GGTGTGGCAAGTCTGGGCGGCGTGGCGGGTCCAGTTCGATGCACAGCTTGAGCGTTCAGCCCTTATCGTTGCGGCCATCGGTCAGCGGACGCCGTCGTGTGCGATGGGTTCCTCAGGCAATCCTGCCCACGTCGCCCCTGCGATAGACGGTGGTCGAGGAACCTGCCCATGCACCCGCCTGGCTTTGCATGCCCACGTGGCCTCCCGGGCTCATGAGAGCAACGCGGTAATCGTCCCAGGCCTGGGGAAGGTGCGTGAACGTTCGCCTGGGCGTTGAGAACATCCGACAGCACCTCACGGCGACGTCGCGCTCCCGACTACCACGACGCTCCCCGGCAGGGCGCGAGCGGTCAGCACCGATCGTGTCGGTCCCACGCCGTACGCTAACGCCGCGATGGCTACACGAGGCATAGAAGGCGCGTACCAGGGTGCCCTGCGAGCGTTCCAGAACCCCATGCTCGCCCTCCTCCATCAAACACACGCGCCGTTCGTGGTGACGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1786646-1786253 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1786645 29 96.6 32 ............................G CTCAGCGCGAACGCGAGTCCAGCGACGACAAG 1786584 29 100.0 32 ............................. CTGGATGTCAGGGTTTGATCTGGCGGTGGTAC 1786523 29 100.0 32 ............................. CTCTCGGGCGGGGCTTTTCTCTTTCGGGCGCG 1786462 29 100.0 32 ............................. GAGGAGACGGCCGAGTTCCTCGACGCCCTGGT 1786401 29 96.6 32 ............................G TTGCGCGAGCAGATCGACGCGGCATTCCCGAA 1786340 29 96.6 32 .......T..................... CCTCTCCTTCACGCCGGGGGCCGACATGTCGA 1786279 27 82.8 0 .....T..T..........--.......T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : AACTGGTCCGATGACTTCGATTTCCCGGTGATCGACCCCAGCATGGACCAAACCCACATCTCTGTGATCGGTCCCGAATTCGACACACCCACCACAGAGGCCGGGGAGTCATGACCGTCATCGTGCTCATCGCTGCCCCCGAGGGCCTCCGTGGCCACCTCACCCGGTGGATGGTCGAAGTCCACGCGGGCGTCTTCGTGGGCAACCCCAGCCGGCGAGTCCGGGACCGGCTCTGGGAGCTGTTGGCAACCCGAATAGCCGACGGCCAAGCCATCCTCGTGGAACCGGCCGATAACGAACAGGGTTGGGCCGTCCGCACCGCAGGAACCGACCGTTGGCGGCCCACCGACTTCGACGGACTCATCCTCTCAGCCCGGCCTCGCCGCCACTGACTTCCCGGAGGAAAGCGAGGTGCGAACCCCACCCTGTCGCATCATGCAGCCATGAACGTACTGAATGAAATTAACGGCTTGCCTCGTTAAAATCCCAGCTCAACAAGT # Right flank : GCACCGGTTTCGTCCTCGCGAAGCTGCGTGCGCATGGACGTCACTGCTTGCGACGTCCTCGTATCGCCGTCGCGCTCACCTGTCAGCCGGTGCCTGCGACGCCGCTGAGCTTCAATCACCGCATGGTTCGCTTCTACCTCGACGAACTCGCTCATTAAAGGAAGGTCGGCATCCGGCGGGCAGATCAACAATGCTCCGCTGCCGTCACCCACACTCCGCTGTTCGTCCGCGGCGCTTATGGCGGTGTCGAAGACAGCCGTCGAGGTTGTCGGACTGATTCTCGCCCGTGGACCCCGGAACCGGGACATTGCCGGAACACGGTCGCTTCCGGACTGGCCGTCACGCCGTTGTTCCCGGCGGATAAAGGCGAGAAGCTGGTCGAGCAGCCAGCTTCGAGACCGTCACTTTCCTCGCGGGCCCCACCTGCGGGGTCAACAGTCAGGCGACCTTCGCCAACGACGGCATGGCAAGGGGCTGAGAAGCTGCGCACTGTCACCAGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1796255-1796833 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1796255 29 100.0 32 ............................. CGGTCGCGGTGTGCGCTGCCTCGGGTGTCGGG 1796316 29 100.0 32 ............................. GCGGCGTGCAGCTCGTCCCGCTCATCGGCGGT 1796377 29 96.6 32 ............................C TTGCCAACGTTGTATAACGTGGTGGCATGTCC 1796438 29 100.0 32 ............................. GCAATGGCTTGTTTGAGCATCTTCTTGGCTTC 1796499 29 96.6 32 ............................C GGTACGCGGTACCGGCGACAGAGTGTCTCCAC 1796560 29 100.0 32 ............................. TAGCCCCTCCCGAAGGTCACGTTTCCGCAGGT 1796621 29 100.0 32 ............................. TTACCGATGAATCGGTGCTGGTAGAGCGGCAT 1796682 29 96.6 32 ............................C GACGTCACCCGGCGCGGCTACCGGGTCGGGTG 1796743 29 96.6 32 ............................T CCATCCAAGGCGCGGACGTTGCCGCGCCGGTG 1796804 29 89.7 0 .....................G....T.T | C [1796829] ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : CGATCCCATTGCAGTCCCGCATCCCATACGAGCCGCGCACAGTCTTCGTCCACGAACTGGAAGGCGGGTACCGCTTTTCCACAATCGTGGACACCGCAGAGCCAAGCGAAAAACGGCCTACCCTTACCCGGACCTCCCGCGATCTCGTCGACCGAGCGGCGCGTCACGGGGGCCAAGAACCGGTCCCACAGGCATTCGGCCACCGCAGCGGTATCCAACATGTGCGCCAACAACAGGTTCCGGCGCCCACCGCCCCGCGAGGCCGACTTCCCCCACAACGCTTCCAGCCATCGCTGTTCCGAAGGATCAGCCACAACCACGTACTGGCCCCCTGCGTTGTCAACCGACGGACATCGGGCACCGTAGAGGACACCGCCGACAATTTCCGGAACATGCGGAAATTGACTCCTCTCGGAGGAGGGATGAGCACTCCCCGCTCACTCTGTGTCAGACTGAATGAAAACCGCTCGTTGGCCGGGTAAATGCCCAGGTCAACAAGT # Right flank : TCGGCTTCACCAACAACTTAAAGCTCCAGCCAGATGGTGTCGTCAGGCTTACGGGACTGTCTAATGACGGGCGGCTACCCGCACTCGGCCCCGTAGTTCGCGGATGTGAACGCCTCTATGGCCGCCTTTGACACGGCATAGGTGACGTGGGACGGCAGCTGGGCTCGGATGAGGGTATGGAGAGCATCCATCGCCAGGATGCTCGGCGTCCGTCGTGGTCCGGACGGTTCACGACCACCGTGAAGTGGGGCCGAGCCGACCCCGGGACAGTGCGCCGGTGGCAGTGGGCATTCGCTTCCGGAATCGACTGTCCTGCAGAACCAGGGGTGTGTAGGTCCCTTCCTGAGCAGCTCGACGAAGTGGCGCATGTCGGCCTCCAAGCACGCGGCCTGCGTGCTTGGAGGTGCAGCTCCGCTCACTCGCTGCCGTCGCCGTAGTCGATGAGCGTGTGCGGAATCCCGGTCGCGACGAGGTGGTCAAGGGCGACGAGATCGGTGCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 2192825-2193306 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 2192825 29 100.0 32 ............................. TGATCGTTAGCGTTGTTGCTGCTGCGGCGGAA 2192886 29 100.0 33 ............................. TTCACATGCCCAAGATTGCAGTTCTCCCACGCC 2192948 29 96.6 55 ............................C GGCACGCAACGTGCTCGGCCACACTCGGGCGAGGTGCTCGGCCACACTCGGGCGA 2193032 29 100.0 32 ............................. CGCTGCTCCATGTGCGGCGAGACGAAGCCGCT 2193093 29 96.6 32 ............................C AGAGTGAGGCGCCTGCGGTTAGTCATGTCCAG 2193154 29 100.0 33 ............................. TTCGAACGCGCCAACGGTGCCGGTGAACCGTGG 2193216 29 93.1 32 .........................A..C GTCCGGTGGATGGTCTCCAACTGTTCCTGCGC 2193277 29 93.1 0 .........A...............A... | A [2193300] ========== ====== ====== ====== ============================= ======================================================= ================== 8 29 97.4 36 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : CCTGCCGCTGTGCGCGCCGTTCCTCGGCCACCAGAACAGCTTGCCGGCTAAGTGCAGGAGGAACATCAACGTCAGCCCGCTACCCGATGACGCCGACGAAGAGGAGGAAGCGCCGCCGGAAGGTTGACACAACCCGGCGATGTCATGAACCGGCGACGCACCCTGCCGAAGCGGATATACGGCCGTCCATCCCGGCATTCGACCACCACAGCGGTATCCAACATGCGAGCCAACAACAAGTTCCGGTGCCCACCACTTGGCGACGCCGACTTCCCCTACAACACTTCCCACCAGCGCGGCTTCGAGGGGAGCAGCACAACCACGTACTGGCCCCTACGTCGGCATCCGACGGACATCGGGCACCGTAGAGGACACCACCGACGATTCCCGAAACATGCGGAAACTGCCTTCCCGGAGACCGGATGACCACGCCCTACCCACTCTGTGTCAGACTGAATGAAAATCGCTCATTGGCCGGGTAAAAGCCCAGGTCAACAAGT # Right flank : GCGTGTGACGACACGTGGCGCGACCCTCGGTGGCGTCACCACGGATGAGAGCTGTATCAGTCCGAGAACGTCAAACGGGCCCCGACGTTGGTGCGCCGGAGGCCCGTTTGGATATGTGAACGGGTCGATCAGATGTCGAATTCGCCCGCCTTCACACCGGCGACGAATGCTCTCCATTCGCTATCGGTATAGCGGATAATCGCGTCGTTAGGCCGCTTGCTGTTGCGCACCTCCACACCGCCCTCGACGCGACGGAACTCCACGCAGTTGGTCTCCTTACCGGAGAAGCTGGACTTGCGCCAACCGTTGTCTTCGCGCTGTACGGTCATTCTGTAGTCTCCACCTTGTCGATGACATCCGCGATGAACCTAATTGAGTCGGTTGGGCTCATCGCCATCCGGTCAAGCTCCGCCCGCGCTTCCTTGTACACCTCAACGTCATCCGCATCCCGCAAGAACACGCTCGACCGCAGGTGTTCCAAGTGGACCACGGGTGCCGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 2195669-2196610 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2195669 28 100.0 33 ............................ GGGATGCGACCCATGTTCGACGTTACCGCAGGT 2195730 28 100.0 33 ............................ CGCCCACCACGCCAGCAGCCACACCAGTGCCGG 2195791 28 100.0 33 ............................ TCGTCTGTGCGGAGTTGCCACCCGGCCGGGGCT 2195852 28 100.0 33 ............................ ACCAGGCCGAGTCCGGCGATTGCCCGGCGGCTA 2195913 28 92.9 33 ...........G.............C.. GGGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 2195974 28 92.9 33 ...........G.............C.. GGGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 2196035 28 92.9 33 ...........G.............C.. GTAGACCACGGTGTAGACGTCGCGACCGGTGGC 2196096 28 92.9 33 ...........G.............C.. CATCAGCACCGAGTGGCCCCGCTTGACCAGGTC 2196157 28 96.4 33 .........................C.. CGGTCGTCGTCCTCAGCGGCCAGAATGGCCTGT 2196218 28 100.0 33 ............................ GCTGATGGGGGCACCCTGGGCGCGGGCGATGGT 2196279 28 100.0 32 ............................ GTGCGCAGTTTTGACTCGGGGCTGGGGTTCGC 2196339 28 100.0 33 ............................ CAACCCCGTCGACAACCCCACGCTCGGCGCCGA 2196400 28 100.0 33 ............................ GCCTGAGTTCGAGTTCGAGTTCGAGGACGAAAC 2196461 28 100.0 33 ............................ CACGCTGCTCGCGGCGGCGTCGCTCATCGACGA 2196522 28 100.0 33 ............................ CTGCTCGTACAGGCCCACACCGATGTGTCCGAG 2196583 28 71.4 0 A...C...AA.......A.....G.TT. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 96.2 33 GTCGGCCCCGCACACGCGGGGATAGACC # Left flank : GCGCCCTGTGCGGCACCGAGCCCGTCGCCTGTCCCCATGCTGAGGCATGGATGGTCGAAAGCCACTTTTGCGTCGACTGCATCGACCACTGCCTCAGCGATGCCCGCCACGGCCACTGGTGCCCCGTTGATGCCTTCGCCCACGCCCAGGAGACAGGTTCCCGAGGTCGCGGCGATGCATGACTCACCGGTCGCCGTGTCCACCCCACCGCCCGAGACCGAGGCCGAGCGGACCGCACGGCTCCGGCTACCGGATACTTGGCAGTGACCCGACCGTGACCTCGATCCCCCACCCGAGTACGTGACCGTCGAAGCCCACGCGGTACTGCACCGGTGTAAGGAGTCAACCCTGCCGATCCTGCACGCCATCCTCACCGAACTACGACGACAACTCCCCCACACGGCCCCAAAGACACCGGGGAGTGGAAGGAATTCCCTCCTGCCGGTGGCAGACTGAATGAAAACCACTTGCTGCCCGAATAAACTCCCAGGTCAGCAAGT # Right flank : CGCGTTCGAAGCGTGGCGCGACCACCTCGACGGCGGTGCGTGGCCATTTGGTCATGGATGAGGGCGAAACCAGCACGAACGCCAAACAGGCCCCGGCGGAGTTGCCGGGGCCTGTTCGTTGGGTCAGCTGTCGAATTAGGAATTAGATGTCGAATTCGCCGTTCTTGACGCCCAGGATGAATGCCTTCCATTCGCTGTCGGTGTAGCGGATAATCGCGTCGTTAGGCCGCTTGCTGTTGCGCACCTCCACACCGCCCTCGACGCGACGGAACTCCACGCAGTTGTCGGTGTTCGCACTGAAGCTCGACTTGAACCAGCGACCTTCGGGTACCGTCATTCTGTAGTCTCCCTGCTGTTGATGACGTCGGCGATGAGCGTCGCAGAATCCTTGGCGCTCATCGCCACCTCGCTCACCCTATTCACCGCGACGCGGTAGATCTCAACCTCGGCGGGCTCATGTAAGAACAAGCCACTGATGCGGTTTTCGAGGTGCACCACGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : GTCGGCCCCGCGCACGCGGGGATAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 2199041-2199495 **** Predicted by CRISPRDetect 2.4 *** >NC_013159.1 Saccharomonospora viridis DSM 43017, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2199041 29 100.0 32 ............................. AGGGCGTCCGGTTTTGGCCATGGTGGAACCTC 2199102 29 100.0 32 ............................. CGCGAGTTTCTGACCGTGGCAGGACCGACCGC 2199163 29 96.6 32 ............................T GAGGGCGACCCCCCGCCAAGCTGTATAACGAA 2199224 29 96.6 32 ............................G TGGGCACGCATGGAGCATGTGACGATCCGGGC 2199285 29 100.0 32 ............................. TTCCTGCTTGGCGCGCTCCCACCACTTCGCCA 2199346 29 93.1 31 .......................A.T... CCCTCCTCCTTTCGGATGATCGAAATGACGT 2199406 29 89.7 32 .C.....................A.T... TGTCCACCGATGACGGTAATGCGCTCGTGCAG 2199467 29 89.7 0 .........................TTT. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTCGGCCCCGCGCACGCGGGGATGGACCC # Left flank : GAGAACCGATTCTGCGCTGACTGCATCGACCACTGCCTCACCGACACCCACCACGACCACTGGTGCCCCATCGACACTTTCGCCCGAGCCCACGAAACACACCCCCAAAACAAGGCCCGTATCGATGTATGACTCACCCGTCGCCGTGTTCACCCCACCGCCCGAGACCGAGACCGAGCAGACCATGCAGCTCTGTCTGCCGGACGCCTGGCACCAGCCCGACCGCGACCCCGATCCCCCACCCAAGGACATGATCACCGAAGCCCACGCAGCACTACACCAGTACGACGAGCCAACCCCGCCAATCCTCCGGGCAGTCCTCAACGGACTACGACGGTAGCTCGTCCCATAGACCTGGTAGATGCGGGACGGAAGGAGCCCGCATCCTGACGCTGTGATCCCGAACGATCGAACAGCCACGAATGCGCACCCCCGCCTGCCCCGTCGCCAAACTGAATGAGAACTGCCCATCGACCGGGTAAACTCCCAGGTCAACAAGT # Right flank : CTGGGTTCGCTGGCTCGATCAGCTTCGGGCTCACGTTGGACGTGGCCACACGTCGTCCCACTGGGTGAGCTACCACGCCGACGGCGGGTCATGGTGCGAGGCCATCACGGCACGGTGACGGAAAGCGAACCCCGGCTATGAGCCGATATCGAAGGCGCCGCCAAGCCGTGGCGCGAGCTCGGCGAACCAACATGGGGCGGACGGGTCCAGTCCCACCGTCACACCCGACCGGAAGCCGGTGTGGTTCGACCACCCCGACGGCATCACGTGGCCATGACCACGGATGAGGACTGAACCAACGCGAACACCGAACAGGTCCCGGCACACCTACGCCGAGGCCTGTTCGGTTGCGTCGGTGGTCGATCAGATGTCGAATTCACCGTTCTCGACATCCGTAGCGAAGGGGCGCCACTCGCTTTCGGTATAGGCGACTGTGCCAGCGTCGGCCGCTTGCTGTTGCGCACCCCCACGCCTCTTCATCGATCGTATGAACGAAGCAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //