Array 1 50249-50944 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KQ236439.1 Neisseria meningitidis strain 421007 Scaffold5, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     50249	    36	  94.4	    30	........G...A.......................	GCGGAACGGGTTGACAGACTGAATTTGAGT	
     50315	    36	  97.2	    30	............A.......................	CGACAACAAAGCCGTCTATGACCTGACCGA	
     50381	    36	 100.0	    30	....................................	TTGGGAGGTGGAAAACCGAATCCTGCACGA	
     50447	    36	 100.0	    30	....................................	ATGCGCGTAAACACTTTACGCAAGGCGTTG	
     50513	    36	 100.0	    30	....................................	CTTCTGCCTTTTTACAAGCTCGCTTTCTTT	
     50579	    36	 100.0	    30	....................................	GCCACGCACCTACACGGGGTGGTTTGTTAA	
     50645	    36	 100.0	    30	....................................	TCGCACACGCAATGGAGCTTATCGTTTACT	
     50711	    36	 100.0	    30	....................................	TCGCACACGCAATGGAGCTTATCGTTTACT	
     50777	    36	  97.2	    30	..................C.................	TTCATTCCGATTGCCTTGCGTTCAAGGTGT	
     50843	    36	  97.2	    30	..................C.................	TGCAATCTGATTTTCCGCCGTCTATACATC	
     50909	    36	  97.2	     0	..................C.................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.5	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCCGGAAGAAGGGGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   GTTGTAGCTCCCTTTCTCCTTTCGCAGTGCTACAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : NA
//