Array 1 433427-434552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBF01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N41751 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433427 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433488 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433549 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433610 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433671 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433732 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433793 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433854 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433915 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433976 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434037 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434098 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434159 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434220 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434281 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434342 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434403 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434464 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434525 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450811-452291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBF01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N41751 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 450811 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450872 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450933 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450994 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451061 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451122 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451183 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451244 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451305 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451366 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451427 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451488 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451549 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451610 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451671 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451732 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 451793 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [451835] 451835 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451896 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 451957 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452018 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452079 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452140 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452201 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452262 29 96.6 0 A............................ | A [452288] ========== ====== ====== ====== ============================= ====================================== ================== 25 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //