Array 1 18753-16883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPU010000006.1 Dickeya dianthicola strain DDI_16NJ11 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18752 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 18685 32 100.0 35 ................................ CTGGATAACACGCTTAGGTACACGCATATAGCACC 18618 32 100.0 34 ................................ TTGCATGGTTTACCCCGCGTACATTTATTTGTCA 18552 32 100.0 34 ................................ GATGTAATCTCTGATTTTCATGCTATTGCCCTTT 18486 32 100.0 36 ................................ TTTTGTTTAGTTTGGATTTTTNTAAGGCCCAAAGGG 18418 32 100.0 35 ................................ CCCTGCTCGGTGCAGGTCTGCCCCTGCCAGTAGAT 18351 32 96.9 14 ...............................N NTTTGCGTCGTTTC Deletion [18306] 18305 32 100.0 35 ................................ ACCATTACCCTGATGGCAACGTCGAATNGTCATTT 18238 32 100.0 34 ................................ CACGGTAGTGCAGTGGGTAACAAGGTTAAGAGTG 18172 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 18105 32 100.0 34 ................................ TGCAGAATCGTAGTAAGTCATGATAGTCACCCCA 18039 32 100.0 33 ................................ ACAGTGTACGGTGATAGGTTGACGGACTGAGTC 17974 32 100.0 36 ................................ TCGTTGTTTAGCGCGGGCTTGTTCTGCCTTAGCACC 17906 32 100.0 35 ................................ ACTGAAAGAGATTCTTGATGCCCGTGCCTGTAAAG 17839 32 100.0 35 ................................ CTGGATAACACGCTTAGGTACACGCATATAGCACC 17772 32 100.0 35 ................................ CTTCTTTTAGTGGGTAATGTATAGTTATCTCAAGC 17705 32 100.0 34 ................................ TTATGTTCAGGACGGATTCGTAAGGCCCAAAGGG 17639 32 100.0 35 ................................ CCCTGCTCGGTGCAGGTCTGCCCCTGCCAGTAGAT 17572 32 100.0 35 ................................ TTCATACCGGTGGTGAATGCCACGTTCGATGATAC 17505 32 100.0 33 ................................ TTTTTGGGAGTGCCTGTAGTCTTTATCTCAAGC 17440 32 100.0 34 ................................ CACGGTAGTGCAGTGGGTAACAAGGTTAAGAGTG 17374 32 100.0 33 ................................ CAGCCAACTGGCGTCAGGTCAATCGCGTTCTGC 17309 32 100.0 33 ................................ ACGCTCACCAGTTTGTATCCGTCGTGGTTGACC 17244 32 100.0 33 ................................ CAACATCAGGTAGCAGGTGATTTGTTACTAAAT 17179 32 100.0 34 ................................ TTANGTTTGATAATCTCATTTTTCTCTTTTTNTC 17113 32 100.0 36 ................................ TCATTTTCTGCCTCGAATCGAATGTNTTCTGTTTTC 17045 32 100.0 34 ................................ TCATTTTCTGCCTCGAATCGAATGTCGCTGTTTC 16979 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 16913 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.2 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 247390-246820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPU010000007.1 Dickeya dianthicola strain DDI_16NJ11 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247389 28 100.0 33 ............................ TTGCCAGTTTCTGTTCCCATTGCGAATGGTGAA 247328 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 247268 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 247208 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 247148 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 247088 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 247028 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 246968 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 246908 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 246848 27 89.3 0 .......................-..CG | GG [246825] ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 256105-258054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPU010000007.1 Dickeya dianthicola strain DDI_16NJ11 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256105 28 100.0 32 ............................ ATTAACTTTATGAGGTGAAGCATGGGCTACGC 256165 28 100.0 32 ............................ AGAAAAAAAATCACTGCCGAACAGCGTGATAT 256225 28 100.0 32 ............................ GAACGAACGAAGTGAGAGAGGACTGAGAGAGC 256285 28 100.0 32 ............................ TCATTGAGTAAGCCTATCAAGACACTAACCAG 256345 28 100.0 32 ............................ GATCGGGAACATCTGCGTGCGGATAACGTCAT 256405 28 100.0 32 ............................ GATCGGGAACATCTGCGTGCGGATAACGTCAT 256465 28 100.0 32 ............................ AGTCTGAGAGTTTTGCAAAAGAATCACTAGGA 256525 28 100.0 32 ............................ AGAAAAATACACAAATCCGACCACACTTGTAA 256585 28 100.0 32 ............................ CGGGGGAAAATCACTACAAAAAAACAAGAAAA 256645 28 100.0 32 ............................ GTACATGGCATTTTCCCGAAAGGGCAGAAGGC 256705 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 256765 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGT 256825 28 100.0 32 ............................ TTGCACGCGCCGGCATCCAGAATTTCGTTCAG 256885 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 256945 28 100.0 33 ............................ AGAGGCGTGANATCTGCGTGCGGATAACGTCAT 257006 28 100.0 32 ............................ CACATCACACCCCCATGTTTTCTGCTGCATTG 257066 28 100.0 32 ............................ TGCGTGTTAACTACTCCGTCGGCACTGGCCCG 257126 28 100.0 32 ............................ GTTCGGGAACATCTGCGTGCGGATAACGTCAT 257186 28 100.0 32 ............................ AGTCTGAGAGTTTTGCAAAAGAATCACTAGGA 257246 28 100.0 32 ............................ TGGTCGATGGTCGAAAACACCGGTTGCAGGTC 257306 28 100.0 32 ............................ CACATCACACCCCCATGTTTTCTGCTGCATTG 257366 28 100.0 32 ............................ TGCGTGTTAACTACTCCGTCGGCACTGGCCCG 257426 28 100.0 32 ............................ GTACATGGCATTTTCCCGAAAGGGCAGAAGGC 257486 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 257546 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGT 257606 28 100.0 32 ............................ TTGCACGCGCCGGCATCCAGAATTTCGTTCAG 257666 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 257726 28 100.0 32 ............................ AACTGGGACAAAGCGGTTGCCGAAAACAAACA 257786 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 257846 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 257906 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 257966 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 258026 27 85.7 0 ....................G..-..CG | AG [258044] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.6 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //