Array 1 69573-68482 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN294111.1 Porphyromonas gulae strain COT-052 OH1355 scaffold8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 69572 32 100.0 32 ................................ TTCATCATCTAAACAGTTCGATAAATTAATTA 69508 32 100.0 35 ................................ AAGGATAATCTGATCGACTATCAAATAACAGACTA 69441 32 100.0 34 ................................ AAAGGTATGATTGACTATCAAATAACAAGCTATT 69375 32 100.0 35 ................................ AAAAAAGATTTAATTGGACACGATTCAGAGTGGTG 69308 32 100.0 34 ................................ TTTTATAGTATCGAAATAATCAGATAAATCTACA 69242 32 100.0 34 ................................ TTCATCGTTTAGACAGTTTGATAAATTAAGCAGC 69176 32 100.0 35 ................................ TTCAGTATTTATTCGTCCTTGTGTCAACTCCGAAA 69109 32 100.0 34 ................................ TATATCGCTATATATTTCATCTGAAAATAGTCGA 69043 32 100.0 35 ................................ TGATAAGATTTTCGCATCGTATTGTACAGCGATGA 68976 32 100.0 34 ................................ TAATTACACAGAACAGCAAGAATACAATAGCATC 68910 32 100.0 33 ................................ TCTTTTATAATATCTTCAAAGATAGTTGTTATC 68845 32 100.0 33 ................................ TAAAAGATCATTTTGCCTATTTATTTTATCATA 68780 32 100.0 34 ................................ TAACTATATAGAACAACGAGAATATAATAGTATT 68714 32 100.0 34 ................................ TGCTATGATCTCTTGATTATAACTTACAGCAAAC 68648 32 100.0 36 ................................ TTCATATGCTCAGAACGGCTCCAAGGCTGATTGATG 68580 32 100.0 35 ................................ TACGAATGTTTTCTCACCCGGTGACTCGCTGCATG 68513 32 84.4 0 ...........................TGCTT | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.1 34 GTCGCACCCTTCCCGGGTGCGTGAATTGAAAC # Left flank : GAGGGGAATTAGATGATTATCCCGTTTTTCTTATTCAGTAAATGTCATGTATATACTTATTACTTACGATGTTCAGACATCTGATCCTGAGGGAGCTAAACGTCTCAGAAAAGTAGCAAGAACTTGCAAAAATTATGGACAACGTGTACAGAATTCCGTTTTTGAATGCCTTGTAACACCTGCTCAACTTGTTCATTTGGAACATGAGCTTACATCTCATATAGATATTTCAGCAGATAGTTTACGCATTTATCATTTAGGATCTAATTATCAACGCAATATCAAAACCATAGGAAAAGAAACCTCTTTCGATATAGAAGGAGAACTGCTCATATAAGGTCTGCGAATCCAATGCTATCAGTAATTTCCCGCTTTTTCGGCGATAACTGATAATCAATAACCTAAATCTTCAAACTCAGCATTCTCTTTTTTATGCTAATTTAGCCATTCGCAGAAAATGCGCTATCGACCGACTATCCATATGGTCTATAGTATCCGCA # Right flank : GTTCTACAAACACGCTACTATCCTTAGTAATGCTATTTTACGACCAAACAACCAACAAAAAGAGAGACTGTACCGAAAACACTTCGGCACAGCCTCTCTTATAAAGTGGATCATACACCCAAAAACGTACGATCCGTAGGAGTTTTTAGTTTTCTGAAAGCTTTTCTTTCAAAGCGGCCAGTTCACCGAGGTCACCGAGTGTAGCTTTCTCTACAGCCTGTGCAGGATTGGCAGCTTCGGCAGCAGCTTCTTTCTGAGCCGCTTTGGCTTCGGCCTTACGCTCTGCGTTGGCTTCGCGCTGAGCCGCTTTCTGCTCATCTTCGAATACACGGCTATGAGATACAATGATTCGCTTGGCATCCTTATTGAACTCAATAACCTTGAAAGGCAACTTCTCTTCGAGTACAGCCTGTGAACCATCTTCCTTCACCATATGCTTCGGAGTAGCAAAACCTTCCACACCGTAAGGCAGAGAAACGACAGCACCCTTGTCCATCACC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCCCGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 166143-163674 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN294118.1 Porphyromonas gulae strain COT-052 OH1355 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 166142 30 100.0 36 .............................. TCCAGAACTTCAAGGGGGATTTTCTGCACTATTATC 166076 30 100.0 36 .............................. ACAATTCCAAGAGAGTCGTAGGTAATTAATACCTTA 166010 30 100.0 37 .............................. AATATTATAGAATCTCTTCTTTGAATAGAGGTTTTTA 165943 30 100.0 35 .............................. TTATCTTCCTTGGCTTATATGTTACTACCTTTTGT 165878 30 100.0 37 .............................. TCCCTGCGAATCCTGAAGGAGTTCTACACCGTCGCTC 165811 30 100.0 2 .............................. CN Deletion [165780] 165779 30 100.0 37 .............................. TCCCTGCGAATCCTGAAGGAGTTCTACACCGTCGCTC 165712 30 100.0 35 .............................. CGAGCGATTAGAAACTACAGAAAGAGTTATCCAAA 165647 30 100.0 35 .............................. CAATGCAGACACCGCTATGGATGCCCACAAACGCG 165582 30 100.0 39 .............................. TCGCAAAGCAGATGCCGGAAACGACCGAAGCGGAAATCA 165513 30 100.0 36 .............................. AATATAACGCAAGCAAGAACAAATCAAACTAACATA 165447 30 100.0 36 .............................. GCTGACGGGAGCTATTGGTTTACGGACACTTCTGAT 165381 30 100.0 36 .............................. TACGGAACGGGTAAACGGTTGTCATATCCTCATCAA 165315 30 100.0 37 .............................. AAATCGGTGAGCAGCTACAGGAGCGGAGCAAAAAACT 165248 30 100.0 36 .............................. CATACACTCGCAAGGAGCAGCCGGCGCATTAACGCT 165182 30 100.0 35 .............................. GAGGATGAGGAGCTGAGAAAGCAGTACCAGCGACA 165117 30 100.0 38 .............................. TCGAGGATGTTGCGATCGCGCAGGTGGGAGACGGTCGA 165048 30 96.7 5 ............................N. TGAAN Deletion [165014] 165020 30 100.0 38 .............................. TCGAGGATGTTGCGATCGCGCAGGTGGGAGACGGTCGA 164952 30 100.0 34 .............................. AAATATACAACAAATGGTTAATGAAGTTGTAGGA 164888 30 100.0 36 .............................. GTATATCCCATATACCGCGGGAAAAAGGGTGAATCC 164822 30 100.0 35 .............................. TCTGTAGACGTGTGCAAGAAAGTCGCCGAGGAGCT 164757 30 100.0 36 .............................. ACGGCAGTCCTGGGAGGCTTCAGGGAAGAAGTGCTT 164691 30 100.0 37 .............................. TACTGCTTCGTGCGGCCGAAAGAGTTGAGCATGCTGC 164624 30 100.0 37 .............................. TTCTGATCCAGAGGGAGATACGTAATCCGGATCGCGC 164557 30 100.0 36 .............................. AGAGTGACGATGTCGAAAAATTATACATAGATCACC 164491 30 100.0 37 .............................. CCTGCCGGAAGTCTCCTAATACGATGCCAGTCCCCAG 164424 30 100.0 35 .............................. AAAAAGGCGAATATGTGATTCGCTACTCAGACCAC 164359 30 100.0 35 .............................. CAGCCTGCCTTGTCCATCTATCTCAACATACATGA 164294 30 100.0 35 .............................. AAATCGCCCTGCCTGTCGCAGAAGCTATCTGCAAC 164229 30 100.0 35 .............................. CTTCTCCAGCTGCTGCAGATAGTTCTGAATCGCTG 164164 30 100.0 36 .............................. GGGCCTTGCTATCGTCGATGGCTATGACGGCCTTTT 164098 30 100.0 36 .............................. TTCTGTTATGCATTCCACAGAAAAAAATGTTTGTCG 164032 30 100.0 36 .............................. AGGCTTTGTTAGTTGGGACTAAAAAAGATTTCGACT 163966 30 100.0 36 .............................. TATTTAGATTCTTCAATGAAGCTGATATGGAACGTT 163900 30 100.0 37 .............................. TCCAGCAGCCATGTGCGCTCGCGGAGGGAGAGGGTGC 163833 30 100.0 35 .............................. ATGCAGAAACTAATATACAATTCTTAGAAATATCG 163768 30 100.0 35 .............................. AGTTATGATCAGTGTAGTATCTCAGAATTGACGAA 163703 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 99.9 34 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TACGTCTGTCGTATCCAGAATTTCCTCCCAGGGCTTTCTTTCCCAGTCGCCGAAGTTCATCTCCTTCAGCCGATCGTCTCGGATGGCATCGGGATAGCCGCAAAAGGCCGCCAGCTTGGCAGCACGCTGCAAGGGACTGGTAAAGACAGCCTCCGGATCGAGGCCTCTGAGACGGGCACACGCCGCCGTAGCCTCCTCTTCGAAGGTATCGCGAACGTCCACATCGGTGAATCCGTAGCAGTGCTCATTGCCATTGAGCAGCACCGAAGTGTGGCGCATCAGATATATTTTCATCAGTGGATTATTAGGGTATCGGTCGGAAAAAAGCCTTCCGAGTCCGACAAAGATAGTAGAAAGAGAGTGCATCTGAAAACAGACCAATCGCGTGCTATCGATCAACTGAGAGGATGGAAGTGCTTTTGTATTCCGGTTCGGAAAATTGCCCGATCTGCATCCGTAAAAACGTGGAGCGAGAATTTTTTCGTTTTGGTGGAGGACTT # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGAGGGTTAATCATGGCAGAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 245530-244541 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN294118.1 Porphyromonas gulae strain COT-052 OH1355 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 245529 37 100.0 35 ..................................... TGCTACTGGTAATTACAATATTACCTTTTTCTAGT 245457 37 100.0 33 ..................................... GAAGATTTATATCTTCTTGATTCTTGATTATTT 245387 37 100.0 37 ..................................... ATTATACTTAGGACCCCTAGGTAGATATTCATTGAGA 245313 37 100.0 36 ..................................... TCTAAGTCTGGTATTTGTCTCTTGATTTACCATCTT 245240 37 100.0 36 ..................................... GCTACTGGGGTTCCGAACTTGATTTGTTTTTTTGTG 245167 37 100.0 38 ..................................... TTCTCGTTCTGATTCAACGAGCGCTTCTTGCATATCTG 245092 37 100.0 35 ..................................... CTATAAATAATATCGGGTATTTAGATTCGGAAGAC 245020 37 100.0 36 ..................................... AATATATGAAGGTTTTATAGCTTGCTGATATTCAGG 244947 37 100.0 36 ..................................... AGAATAAGATACTCTCGTTGTCCATCACCATTATCA 244874 37 100.0 38 ..................................... TTCAAGGATTTTTGTTCCATTATAGAACAATCCTTCAT 244799 37 100.0 37 ..................................... ACTAGAGCACCCCATGCATCAATTCCCACATTGATAA 244725 37 100.0 38 ..................................... AGATTTTTGAGCAAGAGCCCAATCGCAAGTATTTTTCG 244650 37 100.0 36 ..................................... ATTACTGGGTGCGATTTGAGAATCTAATTCTTCAAA 244577 37 97.3 0 ............C........................ | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.8 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCAGCATTGTTATGCCGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACAACTCTTTTCTCCCGTTTTTCGAAAATAGGAGAAAACCGGAATTGGGACTTTTATTTTCGAAAAACAGGGGCGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGCTACCACTTTCTGATTTTCGAAAATAGAAAATCAGCTAATCTGATTGTATATCAATAAGATATAATCAGCTCAACAGCAAAAATGGTGTTATAGCTACATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAGTGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TCTTGATGCTCTACTCATTATCACTTGGACTTTCCAAGCTCGATTTTGGAGTGGTTAATATTGTGTTTTGCACAAGATAAGAGCACATAATCACAGCCTTCCGCTTGTGTGCGAGCCAAGGCCGTTTGCGCACCGTAATTTTCTATTTCGATGCTCCGAAAAACGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTGCGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGTTCTAAGCTCTTACCCTTCTACAACATCTCGGATACGACCCAAAATATCCTGCTTGATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //