Array 1 39145-40104 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCG01000021.1 Cellulosilyticum ruminicola JCM 14822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 39145 29 100.0 38 ............................. AAGGGCTACTGACGGGTGGCTTGATAATATGGCTAATA 39212 29 100.0 39 ............................. TGGTTATAACTCATGCTAATACTCATTGCACTCATAACA 39280 29 100.0 37 ............................. TTCCTTGATCCATAACCTCTGCAAAGTCTAAATTATC 39346 29 100.0 38 ............................. TCTTTGTAGGAGCGAACCCCATATACTTGCACAAATGA 39413 29 100.0 38 ............................. GATTTTACAGAGGACTATGTAGGAATAAACACATTTAC 39480 29 100.0 38 ............................. TTGTGTATGGGTAATAGTATTGAATGCAATAAATGTAA 39547 29 100.0 36 ............................. TAGTAAATATGTAAGTTTGGATGCACTTATAGATGC 39612 29 100.0 36 ............................. ATATAAGTAAAACATTTGGCAAGGAACACATGGACG 39677 29 100.0 37 ............................. TTAAAAATTGTACCGGACTATAGTTACCAGTTTCCAT 39743 29 100.0 39 ............................. TGATTTTATTGAAACTTCCCAAGTGATTCTTTCCAGCTA 39811 29 100.0 36 ............................. TATAGTATAGATACATTTTCTATGCTATCACCTAAA 39876 29 100.0 37 ............................. AGAAAAAGTGATGCAAGTAATGTATGTAGGCTTATAA 39942 29 100.0 38 ............................. CTTACGTTATTGTTCTTAGCTGTATTGTATGCTTGATT 40009 29 100.0 38 ............................. ATTACTTCAGTAAGCACAATTGAATTACCTGCTAGTTA 40076 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 100.0 38 GTTATATATTAACTAAGTGATATGTAAAG # Left flank : TAGAACCAGCATATACATCACAGACATGTAGTAAATGTGGATATGTTGATAGAGAAAATAGACCTTCTCAAGAGCATTTCTTATGTAAGGAGTGTGGGTTTGAAATTAATGCAGATCATAATGCCGCTATTAATATTGCAAGAAGTAATAAAGTGATTGTAGATAAATAAAAATAGAATATAAATTATTTTATGTCCAGATTTAGTGGGGCAAGAGTGAGGGCGTAGGTTAAAAGTGTAAGGCTAATAGCAACTACATTCTACGACACTCGCTAAACGGTAAAAACTCTAGCCTAATATTCTCAAGAGATTACGTGGCTAGACATATCACATTAAAAATTGCAGTGAGGCTATTGATTATAAAAAGTAGTACAACAGTATGTAGGACAAGGGATAGAATGGGTTTTATAGTGGAATTATAAAAACGCTATTGGAGGTTCACTGCAAAATGAAGCAACATATCAAAAGAAAAGCTTTGATAGATAAGGCCTAATGTGTGGG # Right flank : GGCGTGTGATGTTATCTTGCTAGGGCCTACAAAGGAAATACAATAGCATGAAAGTCTATTACCTCAAACAAAACAGTACCTATAGTTAAAGCGATTACAGTGGCGATAAGCCTTCTTATAGCAATTTGGCATGAAACTCTTTTGGTATCTTGTATGCTTAATATAGTGATAATCCCTGCTGAAGCACTAAATGCAAGTCCCATTATTTCAGCTAAGACCATTGCTACTGCTGCACCCACCCAAGTTTTAACTGTTCTAAAACCAATTACATTTTTCAATTCATCTCAGTTCTTTTTCTTTTTATCGTTCCACATTGTAACACAATTTTCATAGCCAACAAAAGGCCAGAGTACATTAATATACCCTGGCCCTTTATAATTATTTTACAATTTCAATTGCTTTACTACTTCCAACCCAAAGAACATTTGCACCAAGTTTCTCTGATATATAACGAATAGGAACTAATGTTCTTGAATCTTTAATCTTCATGCCATCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATATATTAACTAAGTGATATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 102892-106876 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCG01000008.1 Cellulosilyticum ruminicola JCM 14822, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102892 29 100.0 35 ............................. GTTACATTTAGAAGAAACTTTGAAAAGGTTAGTGC 102956 29 100.0 36 ............................. GGCTCGTAGATTCTATGAATACCACCTGCAAATATA 103021 29 100.0 37 ............................. TTAACAAAAATGGTATAAGGCGTGAAAGCTACATATG 103087 29 100.0 38 ............................. AGAAAATGGCGTGACTACATGGAAGGTACCACAACTAA 103154 29 100.0 37 ............................. CTAAATATAGTTAGTTGCATGGCTTTGTAATCATCGC 103220 29 100.0 37 ............................. TCCTACTAGCTCAACCTCTTCAAATTTGTACCCCTTA 103286 29 100.0 36 ............................. GGTGCTACAATTTACTACACAACAAATGGTGATGAA 103351 29 100.0 38 ............................. CAGTGTTGTTTTGAAGTAGTAAGTAAATAAAATAATAG 103418 29 100.0 37 ............................. TTGCCAGTCCGAAGCCATTCTTCATTAACATTAAATT 103484 29 100.0 37 ............................. ACTTGTGTTGGTTTGCAAAAGTTGATTTGGTCAATGT 103550 29 100.0 37 ............................. TTACACCTAAGTCCTCAATTGCTGCTGCATTTTCTTT 103616 29 100.0 38 ............................. GTATGAGAAGTTAAGAAAGAGACATTGTGTAGGAGCAG 103683 29 100.0 36 ............................. TTTTCAAGCTTTGATACAGCAGTATTTGTAATTCCT 103748 29 100.0 37 ............................. TTCAATTTGATCAAGTGATAGAAGTTCATCATTACTA 103814 29 100.0 38 ............................. GACATTTTAATACATGGAAGTCCATGTCAAGACTTTAG 103881 29 100.0 38 ............................. TGGGGATTGTGTAGTGGTAATGCTAATGATATGAGAAA 103948 29 100.0 37 ............................. TGATGTCTTGTTTTATGAAATGATCATGAACTAATTC 104014 29 100.0 37 ............................. TGTACATACTGGAGCATAGCAAAACAAGGAAGAGAGA 104080 29 100.0 35 ............................. AATTTCTCTAGCTTGTTATATGCAAATGATTCTGA 104144 29 100.0 35 ............................. CTGGGTTACCTTTATCATTAAGAGCTAGTGGGAAA 104208 29 100.0 38 ............................. ATTCTTCTTAGTGCAGAACAGTTAAGCAAAGGGAGTGA 104275 29 100.0 38 ............................. GTATAAATCGTCAAGTTTCCTAAAACAAGCTATCTCAG 104342 29 100.0 39 ............................. TTAGCATTGGCTTTACCACCAATCCAAACTGTTATCACG 104410 29 100.0 38 ............................. TATATGACAGGACAAATGCTAATTGAAAAAATGGCTAA 104477 29 100.0 38 ............................. GTTGGTAGTGAACTTCATAATGCATTAATTGAGTTTAG 104544 29 100.0 38 ............................. ACGTGCTGTTACTCTGTCCTCACCTGTAAGCTGTTTTA 104611 29 100.0 36 ............................. ACAGGAAAGCTTAGCAAAGAACAAAAAAAATTTTTA 104676 29 100.0 38 ............................. ATGAGTACGGTCTTTTTTGTCTCTAGATATACATCTCG 104743 29 100.0 35 ............................. GTAGAATACGTTGATGACTTTATTAATATATTAAA 104807 29 100.0 35 ............................. TTGTTTTGCAAAAAAATAAAGCTAGAGCCTAAGCC 104871 29 100.0 36 ............................. CTGGAAGATAGTATAAAAAGAATATTCATTTCTTTA 104936 29 100.0 37 ............................. AATGAAGTGAAACAAGGATATTTAGATAAACTTGAAA 105002 29 100.0 37 ............................. TTGGTAGTACATATTGAGACATTTCAAATGTTAATTG 105068 29 100.0 38 ............................. TTTCATTTTGACCATATATCCTTGCTAAAATAGCATTT 105135 29 100.0 38 ............................. GTAGCTAGAAACTTTGATGTGATAGGTAATAGTATTGA 105202 29 100.0 37 ............................. ATGGAATTAAAGGATTTCATGGAAAAAGAACCTGCTC 105268 29 100.0 36 ............................. GTTATACGTGCAAACCATTCACCGACTGCTTGTAGC 105333 29 100.0 38 ............................. AAATGTTGGGATGCTAAGATATGTAATTGCTAAAGCTT 105400 29 100.0 36 ............................. TTGTAAGATAATGAGATATAAGTATCCCTTATCTCT 105465 29 100.0 38 ............................. TTTTAGTGCAAGCTCAAAGGTTTTTCTTAAACAAGAAA 105532 29 100.0 37 ............................. TAGACAAGCCAGAGGATTATAGGAAAGTAGTCACTAA 105598 29 100.0 37 ............................. TATCTTACAGACATACTTAAGGGTACTAGGAATGGTG 105664 29 100.0 38 ............................. TGGTGCTTAGCTTGCAATTCTAGAGCCTTTAACTTGTC 105731 29 100.0 37 ............................. CAAGAGTCTTATGAAGATATAGATTCGGTAGATGTTG 105797 29 100.0 38 ............................. ATGTATCTCCTCATAGTACTTACCACTTTAGCTATAGA 105864 29 100.0 36 ............................. ATTTCTGCTACTTTAATACTCATTGACTTAGATAAG 105929 29 100.0 36 ............................. GCTTCCTATGTACAAATAACTACGTTGAATAGATGT 105994 29 100.0 38 ............................. TTATATTAGTCTGATTTACACGCTGAATATTATAGTGA 106061 29 100.0 37 ............................. AGAAATGGACAAGTCGGATTGTTATAACCCGTTCATT 106127 29 100.0 36 ............................. ATAGGTGTACATTGTCAAGAAAAACTTCAACTGAAC 106192 29 100.0 38 ............................. GGAAGTAAAAAGATGTTTGCATAGGAAAACTATTTTAA 106259 29 100.0 37 ............................. TTTAAAAATGCGTTCGTGTTTTCCTTTAGTGCGATGG 106325 29 100.0 35 ............................. CCTGTCTCACCCCCGTATTTTATCTAGTTATAATT 106389 29 100.0 38 ............................. ACTACTACAGCTAAGAGTATGTTTAAGGATGTAGAAAA 106456 29 100.0 35 ............................. TTGCCCTTGCAATACTCAATAAGCTCGTCATAATC 106520 29 100.0 37 ............................. AATGAAGGCGTAAAGCTAAATGAAGGACTTATAAAAC 106586 29 100.0 37 ............................. ATGAGTAAACAACTCTTTTGGTCTCAAAGAACAAATA 106652 29 100.0 37 ............................. TTTGACGTGTCATTTATCTATATATAATATAACATTT 106718 29 100.0 37 ............................. TTTGACGTGTCATTTATCTATATATAATATAACATTT 106784 29 100.0 35 ............................. AAACACGGTTATCTTACGTGCGTAGAAGTAGTAGT 106848 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 61 29 100.0 37 GTTATATATTAACTACGTGATATTTAAAG # Left flank : ATAGGTGATGAAGAATATAGTCCATTGAAAGCGTGGTGGTAGAATGTTTGTGATTGTGACATATGATGTAGAAGAAACTAGGGTAAATAAGGTAAGAAAACATCTAAAGAAATATTTAATGTGGTCGCAAAATTCAGTGTTCGAAGGAGAAATTACAGAAGGTAAATTGCATAAATGTTTATTTGAGTTAAGACGTATTATTGAGACTAAAGAGGACTCAATTTATATCTACAATATAAAAAATCCTAATAGTATTAAGAAAGAAGTGTTTGGAGTAGAAAAAAATATTCACGAGTTATTTTTATAGTAAGATATTATTGCAGTGAGCGCTATTCTTATAAAAAACGATTTAAAGCTTAGAGCATCAATGTATAAGAGAGAAAAAAATAAAATTTTAAAATACACTACTAGAACCTCACTGCAAAATAAGCAAATTTGAACAATGAAAATAGTGAGGAAAGCTAGTAAAATGAGGGAAGGAGATAGTAAATAATTTTTGG # Right flank : TCCTAAACAACGCAAGCGGTAAATAGTTCGTACCTCGAAAACTAGTAGTTTTTTTGAGACAATGATATAGAACTTTAATAAACTATTAGTTTTTAGGAGGTGCTCCATCATAGATAAAACCACTTATCAAATACGACTTAACAACTGGGCTGCACTCATTAATGAGTGCAACAACAGTAACATGACTAAAAAAGCATAGTGTATTGCGAATAACATTAACGAAAAACAATTCTTTTACTGGCAAAGGCGTGTACGCATGCAGCTTGTTCAGGAATTAGAGCCAACATCAACTTTAACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATATATTAACTACGTGATATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 5542-6658 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCG01000015.1 Cellulosilyticum ruminicola JCM 14822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 5542 30 100.0 39 .............................. TCTTATTAGCGCCTCTGTAACAATCATTTGAATTTCTCC 5611 30 100.0 38 .............................. TTCTCTCACTCCTCACAAATTCTTATTTTTTATGTACC 5679 30 100.0 39 .............................. AAGGGTCTTTGCGATAATGCCCACACTACTGCATTTTTA 5748 30 100.0 39 .............................. CTTAATGGTTTATGAGAAGTTGACTCAATCTCAATTTCT 5817 30 100.0 40 .............................. AAGTATAGCACTAATATACTCTATATTATATATACTTGCA 5887 30 100.0 36 .............................. TTTTCTTCCATTGTGTAGAGTAACACCATCATAGAA 5953 30 100.0 39 .............................. AGGTGTGATGATTTACACCCATAAATTATATCCTCTTCT 6022 30 100.0 37 .............................. TCTCTCATCTGATTTAGTTCCCTCTTCAACAAATTCT 6089 30 100.0 39 .............................. GAATATCTTTCACCAGCATAGCCACCGAAATGTCTAACA 6158 30 100.0 36 .............................. ATCTTCTACTGCTACACCAAAACATCCATTTTCAAA 6224 30 100.0 35 .............................. GCATATAGTCTATCTGTGACTGTAGCACATTTTGA 6289 30 100.0 37 .............................. GTGACCATACCCATTTAAATCTCTCCTTTTACACTTT 6356 30 100.0 37 .............................. TCGTCCTCGTCGTCTTCATCATCCTCATCATCTTCGT 6423 30 100.0 36 .............................. CAAATGGTAATACAGCAAGTACTTTAACTGATACAG 6489 30 100.0 40 .............................. TCTGCTTTTGTATAAAAAACCCATTCCATATGCGTTACCT 6559 30 100.0 40 .............................. CCTATTAAGTTTGCTAATCTCCTTAAGTACTAAGTCAACC 6629 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 99.6 38 GTTTATTGCGTACCTATAAGGAATTGAAAC # Left flank : TCCATTTAAAAGGTAAGAAAAGCAGCACTAGCTTCTATTGAAGGTGTAGTTTATGAACCAATGTATGTGAGAACCTAAGTTATAAGTGGTATATGAAGTGATAATATCTTAGAAAGTAAAATTTTAGGAAAAGTTACACAGCACAAAGAATTTGCCTTCCAGCCATACCTACCAAAAGTTGAGGGGTAAGGTAAGTAAGGCTGGAAGGCAAATTTCCTAAGCACTTAAGTAACTTATAAAAGTTTAAGCTCTCAGGGCTGATTAAAGCGGGCAAATAAAAGCAGTTCCAGTAAGAATAAGCAAACTGGAACTGCTTTTTTATGTGAGAAATAATAAATATGTACTAATGTATAAAATCTGTCGACCTCCAGTAGTGTTAAAATGCCGGGACATCGACAGAAGGCAAAATAACGTATTTACAAGGTTTATAGAAAATGATAGAATTAATTAGATAATAGTTTAAAAAACTAGAAACCCAGTAATATCAATGTGTTGATAGG # Right flank : TGGAAAGCCACTAAGTATATTAGACTTTTAAGTAATATACTTAGTGGCTTTATTTTTTGAAATATTTATTAAACTCATGTATAAAAATATTCAACTTAGGAAATAACTTAACTAGAATTTGAAGTTAAAGGAGATGCTAAGGTGAATATTACGGGGAGTATATTAAATAGTTATATGGTGTGTCCTAGACAAGCTTGGATGGGGGCACATGGCATTAGTGGTGATAAGGATAATGACTTGCTGCGAGAAGGGTTATATATTCATGAGCAGGCTTATCAAAGAAGCATGATAAGGAAAAAGCCTTTGGAGATAATGTAATTGATACAGTTCAAAATAAAGAAGGGAAATTGATTATTGGGGAAGTTAAGAAAAGTTCTAAATGTATAGAAAGTGCTAAAATGCAGCTTTTGTATTATTTATATGATTTAAAGCAACAGGGAATAGAAGCAGAGGGAAAATTACAGTTTCCAGAAGAAAAAAGGGTCGAGTCAGTTATTTTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 8735-9166 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCG01000015.1 Cellulosilyticum ruminicola JCM 14822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8735 30 100.0 36 .............................. ACCACCATCTTACTTCTCTAAGTTCCTGTGCTATTC 8801 30 100.0 36 .............................. CTATTGATATTAACGCAATACAAATCATCTGCCATT 8867 30 100.0 35 .............................. ATCTAACATTCTACCTTTAATATCTGTTCTATCTG 8932 30 100.0 38 .............................. TTTTCATATTTGTGGTGGTCAATATTTTTAATTTCCCA 9000 30 100.0 38 .............................. TATTTTTCAAAGTGTTCATTTTAGAAAGGTCTTTACCC 9068 30 100.0 39 .............................. TATTTCCATCTTGTCTGCCATATCTCCCTGACTGTACTC 9137 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 37 GTTTGTTGCGTACCTATAAGGAATTGAAAC # Left flank : AAATTGCAGAAACACTTTATGGAAGAACAAGAATATAAACCATTTATAAGTGCATGGTAGGAGGACGATATGTTTGTTATATTAGTATACGATATTAACGAAAAACGAGTAGCGAAGGTACTCAAAATAGCTAGAGAATATCTTACGTGGATTCAAAATTCTGTGTTTGAAGGTGAAATATCAGAAGCTAGCTTTAAGATTTTGAAGGATAAAATAAAAAAGAAGATTAATCCAAAAGAGGATTCCGTAATCTTTTATATTTTAAGAAGTAAAGCATATACCAAGAAAGAAATACTAGGACAAGAAAAAGGCGGACAAAAACTTTTTATATAAGAAATATGGATGATAATACAAAATCTGTCGATGTCCAATCATGCAAAAATACCGGGACATCGACAGAAAACAAAATAACGCATTTACAGGGGTTGTAGGAAATGATACAATTAATTAGATGATAGTTTAAAAAACTAGAAACCCAGTAATATCAATGCGTTGATAGG # Right flank : CTTTGTTGATTTAATTCTTATTAGTACAGGGGATTGAAATTAACAACAAGAGTAAAAGGAATAAAGACAATAATAGTAAAAAAGACTGGCATAATCCCAATGTCATTTAGTTAAGTGATATTATATAAAAAGGTCATCTACGAATAGTTAAATATTGGTAGATGACCTTTTTTATAGCTTAAACTCTATCTAAATGTATAATTGTAAGCGATGAATAACCTACCGTCTGTTCAAATGTATGTAAGTGGTAAATAGTTCGTACCTCGAAAACTAGTAGTTTTTTGAGGGCATTATTTGGCTAGTTATTATCTTTTTAATACAATATTGAATATTTTCTTCTGTTATACCTGGTATTTCCTCTTTTATATAGTCAAGAGCCTTCCAGTATTTGTTATCCTTAAGGTAGCGATCAACTGTATTGTAAATATCTTGCTTATCAGAATGGGGGTGTTATATTGTATTATGATATACTATGAGATTTTGCTGGAGGTTAGAGTAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTTGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 18225-19348 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCG01000015.1 Cellulosilyticum ruminicola JCM 14822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 18225 30 100.0 36 .............................. TGACATCGGCAAAATGGTCATCATAGGTATTTTTTT 18291 30 100.0 38 .............................. GCTTTTAACAATAAACAATGGGTTAGGTCTATTCAGAT 18359 30 100.0 37 .............................. CGTAAAAGATTTGGCTAAACAACAAAATGTTAAAATC 18426 30 100.0 39 .............................. TGAATGCTCTTTCTCCATCAGAAGCATATACTACATCAT 18495 30 100.0 40 .............................. CATCTATCCTTGCATCTCATACTCTCACGCTCCCAAATTC 18565 30 100.0 40 .............................. TCAAACTTTAAAGGCAGATTTAAGCAAGACATAAAATATG 18635 30 100.0 37 .............................. GCATAAATGCCATTTGATGTAAGTATACTCGTGTTTA 18702 30 100.0 38 .............................. AACTCTTCTTTTGTATCTTCTAACCCCGTATCATTAAA 18770 30 100.0 38 .............................. TGATTAACCATTTCTTGAGTATCGAGCATTTGATATGC 18838 30 100.0 39 .............................. TCTTGCTTGTCCTTATCAGTTACGCATGATCTATTAATA 18907 30 100.0 38 .............................. CTATTCTCGCTTTTATTTTGTAAGTCTTGCTAAATCAG 18975 30 100.0 39 .............................. TTGAGCCATTCTATGACTTTTAGTAAATGTTTGCTTCTA 19044 30 100.0 38 .............................. GTCCTTCAAATCCATATCTATAAGCTGAAGCTAATAAT 19112 30 100.0 39 .............................. ATAAAACTGTTTCTTCTAAATCTGCATTTTCTAAATCTG 19181 30 100.0 39 .............................. ATAGCATTCTCGAAATTAGTAAATACTCTAGGGAACTCA 19250 30 100.0 39 .............................. CTAGTATCTTTTAAATTTTTAGTTGTTACAACTAACCCT 19319 30 83.3 0 ......................G.AA.GC. | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 99.0 38 GTTTATTGCGTACCTAAAAGGAATTGAAAC # Left flank : AAATTTAGGATGTGCTATTAAAGACTATTCCTTTGTAAAAAGAAATAGTGATGGCAAGTTTATTAAAAAAACTAATGAGGAGATTATATTAAGTTTCTTCTATATGATTTTAGATGAATTACATAAAATGGGAACAGTGCCAGCTATAGATATTAGAGAGTATGCAAAAACGACAATTGATTTGTTCTAAAAAATAGGATTTCATATAAAATATATAGTAGTATAAAATCTGTCGATGCCCGATAGCGCAAAAAAATTCTAGGGTATCGACTTAAGGAAAATAACGTATTCACAGGGTTTGTGTAAAATATCATAAAAAGACTGTCTATATAAGAAATATGGATAGTAATACAAAATCTGTCGACCTCCAATAGCGTCAAAATCCCAGGACATCGACAGAAGGCAGAATAACGTATTTACAAGGTTTATGCAAAATGATACAATTAGTTAGAGGATAGTTTAAAAAACTAGGAACCTAGTAATATCAATGTATTTCTAGG # Right flank : CCCTAAATAATATAAGCATTTTATCTGCTTTATTATTTAGGGCTTTTTTCTTTTTATATTGTTCATATTGCACATTGAAAATCTTTCCCTCAAAATCTATAATAAAATTAATTTATCATATTTATAAGGAGGGACGGCAATGGCGTATGTACCATATGTAGTGCAGCAAACTTCTAAGGGTGAGAGAAGTTATGATATTTATTCTAGATTGCTTGCGGATAGAATTATTATTTTGGGTGATGAGGTAAATGATGAGACTGCTCAGTCTGTTGTGAGTCAGTTATTATTTTTGGAGGCTGAGGATCCGGATAAGGATATTTGTTTATATATTAATAGTCCTGGTGGGTCTGTAACGGCTGGGTATGCCATTTATGATACAATGCAGCTCATTAAGTGTGATGTATCAACGATTTGTATGGGGATGGCTGCTAGCTTTGGAGCTTTCTTATTAGCTGGAGGTGCTAAGGGCAAACGTTATGCACTGCCTAATGCAGAGATTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGCGTACCTAAAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //