Array 1 166628-164964 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFA01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 3168 3168_2_length_616000_cov_75.4278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166627 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166566 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166505 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166444 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 166377 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166316 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166255 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 166194 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 166133 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166072 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166011 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165950 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165889 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165828 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165767 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165706 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165645 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165584 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165523 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165420 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165359 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165298 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165237 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165176 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165115 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165054 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164993 29 96.6 0 A............................ | A [164966] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184012-182886 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFA01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 3168 3168_2_length_616000_cov_75.4278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184011 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183950 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183889 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183828 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183767 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183706 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183645 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183584 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183523 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183462 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183401 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183340 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183279 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183218 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183157 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 183096 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 183035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182974 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182913 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //