Array 1 1341758-1345685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068997.1 Klebsiella pneumoniae strain RIVM_C018500 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1341758 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 1341817 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 1341878 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 1341939 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1342000 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 1342061 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 1342122 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 1342183 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 1342244 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1342305 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1342366 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1342427 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1342488 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 1342549 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 1342610 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1342671 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 1342732 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1342793 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 1342854 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1342915 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1342976 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 1343037 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1343098 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1343159 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1343220 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 1343281 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 1343342 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 1343403 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 1343464 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 1343525 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 1343586 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1343647 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 1343708 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 1343769 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 1343830 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 1343891 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1343952 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 1344013 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1344074 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1344135 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1344196 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1344257 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1344318 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1344379 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1344440 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1344501 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 1344562 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1344623 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1344684 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1344745 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1344806 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1344867 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 1344928 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 1344989 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 1345050 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 1345111 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 1345172 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 1345233 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 1345294 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1345355 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 1345416 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 1345477 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1345538 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1345599 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 1345657 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //