Array 1 4773808-4776321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026363.1 Brevibacillus agri strain DSM 6348 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4773808 36 100.0 40 .................................... TAGAACCTGATAAAGAGTATGTATATCGTTTTGTTGCTGA 4773884 36 100.0 37 .................................... ATTGACCACTCCGGCGTTCGCCGACTCCGGGGGAATG 4773957 36 100.0 37 .................................... ACGTACCGGCGTCCGAACCCTTCAATCCGTTGTTCGC 4774030 36 100.0 37 .................................... AGTGCCGATTTTTGATGACGTAACGAAGTTGAATAGA 4774103 36 100.0 40 .................................... CTGCCTGCCCGAAAACGAAATGGGCTACCATGTCGGGGCC 4774179 36 100.0 38 .................................... CAGGGTATCCGGGAGACGAATTCGACTATAAGAGTGAG 4774253 36 100.0 35 .................................... GTCCAAGCACGTACTGACGGTGACCAAGCTATTCG 4774324 36 100.0 35 .................................... GCCGCCTTGCGGGAGTACATGAACACCATCATTAA 4774395 36 100.0 36 .................................... TTCGCTCCTTCGTTGATTTCTTGTCTTTATTATACT 4774467 36 100.0 37 .................................... AACACCTCACCCGTTGCGCTACTTGTCCGGTCACTTA 4774540 36 100.0 34 .................................... GTGCGGGTGATCTTATTGCCCGTATCGACTTCGA 4774610 36 100.0 36 .................................... CGAATTGGATGAGTATGCAATGGCTGAAGCCGACAG 4774682 36 100.0 35 .................................... GCTGCCGGAAGAAGAATAGGAGGGATTGTATCATG 4774753 36 100.0 35 .................................... ACCTGAAGGGTAAGAACATGAAGTGGCATTTACTG 4774824 36 100.0 35 .................................... GTAAACACCAATGGAAGGCAACAATCGTTTGTTAA 4774895 36 100.0 34 .................................... GGAGCAGCGGAAGCAATTCGACTCTCTCTATCCG 4774965 36 100.0 40 .................................... GGCCTATGTTGGAGTCCTTTGTTACGGTATTACTTGGTGA 4775041 36 100.0 37 .................................... GGAGGGAGATTAGATGCCAAACGAGTTCAACGAGCAG 4775114 36 100.0 37 .................................... CGAGCGGCAGCAGGCGCAGCCGCAGGGCGAGAAGCCC 4775187 36 100.0 37 .................................... TCTGCCGCGAGCTGGCCGAGCGCGAACAGGGTTGCGA 4775260 36 100.0 38 .................................... GTCGATTCGTCCCGTGTTTTTGCTTTTGACCAGTTTCA 4775334 36 100.0 36 .................................... TCTATGTTATTCTATGGGTGTCGAAAGGACGCTATC 4775406 36 100.0 34 .................................... GACCACGGCCTTGTTAGCTTGGTGCGAGCGCGAT 4775476 36 100.0 39 .................................... AAGAGACAGGATGATTGCCACATCAAAAGCCAGTATCAA 4775551 36 100.0 34 .................................... GACTTGGCTATCGACGACTTTGGACGTATCGACC 4775621 36 100.0 37 .................................... GAATGAGTAGCATGGGACAGTTTTTTATCGACCTTTT 4775694 36 100.0 37 .................................... TGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 4775767 36 100.0 40 .................................... ACGTTACTTAAATGCTTTACTTTTGGTTGCTACTATCGTA 4775843 36 100.0 38 .................................... AGCGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 4775917 36 100.0 38 .................................... GTGATATGATTATGTGTTTAAAATGCTTCCCGTAAAGC 4775991 36 100.0 39 .................................... TTCGTATAAATACATGTTACAATGTCTAAGAAATATTCA 4776066 36 100.0 40 .................................... GCGCACGTTGCGGCGCTGCATGACGGTGGTCGAACCGTCC 4776142 36 100.0 34 .................................... GGACAAGGCGAAACGGTCGATATGGCATCCTTCC 4776212 36 100.0 38 .................................... CGAACGAGCAGGAGACGACGATTCGTGCATCGTCACCG 4776286 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 35 36 100.0 37 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGAAAAAAAGCTTTTCGACTTTTTTTGTTGGACACGTGGCAATTGTAGGACCGGACTACGATATCATTCACGTTCATCCAAAAGGACCTTGGTTCGTTGAAGATATCGATTACTATGTATCTCGATTTAGGGACGGCGATAAGATCGAAGTTCTCCGTCCCAGGAGTGGAGCTTCTAAAGCTGCTAAATGGGCAATCAACCATATTGATGACGTAAAGAAATACTACTTCAATATGGATTTGGATAATATTGAGCTTAGTTATTGTTCTAAGTTCATCTGGCAAGCATTTTACTATGGTTATAATCTCGATATTACCGGCATGGGTCTTACCGATCGCAGTAGAGCAACCCATATTTATCCAAATGATGTTCGAGATTCCGATCACCTTGCATCAACAGAAACCATCGACGTTGAGAAGTAAGAAGCTGAAACCTCGCATTAGCGAGGTTTTTTATTTGAGCGCCGATTTAAGATCTCAGTAGTTTAGACGGACTTTAGC # Right flank : CTCCTTCCCACTCAACCCCTACAGCCGCAAGCCTTACAGACCCGTTTTTCGAGCAAGCCAAAATTCAATCGCCATTCCTCTTATCCATCGGCTGCCTCTTCCCCTAAAAAACTCTGGAAAGCCTACGCCCACAAAGAGTTCGAGCATCCCCCGGCTTTTTTGACCTGAGAGGATGCTCGCATCATAAAATTCGAAAGCTTAGTGGAAAGTCGTGATTATCCGTGGGAATAGACCTGTGGATGGGCCCATAATGCACACGCACGGATATGTAAGTCGACTTATGGCCTATAGCGTGCGACTGACACCTTTATTTTACTCTTTTTCCACTTTTGTTACAACTAGCTTTCTTCATTCCTTAATAGATAAATTTGGTCAAATCGCGAGGCAGAAACTCCCTGCCAACAGTAGAAATCCGCTTGTCCAGTTGATCTCTCGTCACTGGGCCGATTTTTACAAACATGACCTGGTCTTCTCCATGGTGAACCAGCTCCGCCAGGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 4782544-4787902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026363.1 Brevibacillus agri strain DSM 6348 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 4782544 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [4782561] 4782611 36 94.4 41 .......C.A.......................... TTCTTAACACGCGACGACTCTTTCCCCACACGATTTCGATG 4782688 36 100.0 38 .................................... TCGATGTTCGCGATCCATTGGCGATTAAACAGGCTGGA 4782762 36 100.0 38 .................................... ATGTGAAAGATTGGAACATGCTTGCACAAAAGGCGCAT 4782836 36 100.0 37 .................................... AGATAATAAATGCCAATTGTAACGATACCGAGTAACC 4782909 36 100.0 40 .................................... CAACACAACAATCATGGTTCGGGAATGCCTCAGCTTTTAG 4782985 36 100.0 38 .................................... AACTATAACATAACCCAAGCAACCGCTTATAGTTTCTG 4783059 36 100.0 40 .................................... ACCAGCGCCTTGTCTGCCATGTATTGCTGTGCCAAAGCCA 4783135 36 100.0 35 .................................... TAACCGTAAGCCTGTAACGAAGCGTTCGCTCCAAC 4783206 36 100.0 35 .................................... TGGGACGGTGCACAGCAGACCGTAAAAGATGCGTT 4783277 36 100.0 36 .................................... ATCTAGTCACCCCAAGGATAATTGTCGTCGTAGTCC 4783349 36 100.0 38 .................................... CTCTAGCTTGCTGTCGAAGTTAGCCCTACTGTTGATGA 4783423 36 100.0 38 .................................... ATCTGCATCACGGGTAGCAACGCCCGCAGTCAGGTCTT 4783497 36 100.0 36 .................................... GAGGATCGTGTCTGTCAACGGGTATTGCACGCTTCC 4783569 36 100.0 36 .................................... TATGAGGTTGTCAATGTCGAAAAAGTGCAATACAAT 4783641 36 100.0 37 .................................... AGGAAATAAATATGCAGAAATTGAAGATTCGCAAAAT 4783714 36 100.0 38 .................................... GGTGAATTGTTGCCAACATTGATTGAAAAAATTGATGA 4783788 36 100.0 35 .................................... AAATGATAGTCAGTAAAGTCAGTATAGACCCATTT 4783859 36 100.0 36 .................................... GCGAAACGACTTCTTTTTCTACATGCGCTGCCCGAT 4783931 36 100.0 36 .................................... GAGTCCAACAACAAACGAATGGGATCGTATTATTGT 4784003 36 100.0 34 .................................... AATACTGTTACTGGCAAAACAATGAGTTGCTTGT 4784073 36 100.0 40 .................................... CTGAATTTCATCGTGAATGTTTGCAATCATTCTTGTTTTA 4784149 36 100.0 37 .................................... ATTCAGCTTATGAGGAAAAAGGGGCTTTCCATCGGCG 4784222 36 100.0 39 .................................... GATCAACTCCTTTACTTCCGAATTTTAAAGCGAAAAAAC 4784297 36 100.0 34 .................................... CGCTAATGGACGAGTACGCCCGCGCCATCCACTC 4784367 36 100.0 36 .................................... TTCCCTATGGACATTCAATATTTCGCGGAAGATTCC 4784439 36 100.0 38 .................................... GAAACATGATCCAGTGGCATAAGAGTGGGCCGCGACAG 4784513 36 100.0 35 .................................... CTAACGGTCAGCTTCTCACCCTCCCCCATTGGGAC 4784584 36 100.0 39 .................................... CTGCGTCTATATCTCGCATCGTGTGTACGGCCTCTTTCC 4784659 36 100.0 36 .................................... TTTGCCGCTATCGGAGGATGATTTGCGATATGTCGG 4784731 36 100.0 44 .................................... GACTTTACTTGCACAAACGATAGCAGTCGCTTTGTTTTGGTGGG 4784811 36 100.0 35 .................................... TTAGAATTTCGTAATAGCTGTCCTGCTTATTCCCG 4784882 36 100.0 36 .................................... GGTAAAGTAATGTTTCTGATCGACTTTTCCGGCTTC 4784954 36 100.0 37 .................................... GCGGATGTAACCGAGCAGCAGCGACTGGAGCAGCAGC 4785027 36 100.0 36 .................................... ACAACTCATCGTGATCGCCCGTCGGCATGAATATCG 4785099 36 100.0 38 .................................... CTGATAACCAGTATTTTTATGATCGCTGGAAAGAGTTG 4785173 36 100.0 34 .................................... CCTGCCTGTCGCTCTAGCATTTCCTGCTCTAAAG 4785243 36 100.0 39 .................................... CAGGAAACAGATGGAGCGCCGACTAGCTCATAAAAATGA 4785318 36 100.0 36 .................................... AAAGAGGCTTCAAACCCTAGAAGCATTCCATTTTGC 4785390 36 100.0 35 .................................... TTGTTGAATTCGTAGAACTCTTCGATAGCACGCAC 4785461 36 100.0 38 .................................... TACTTTTTTTAGGTATAAAAGACCAAAACGTTCGACAT 4785535 36 100.0 35 .................................... GATGCCTTCCACTCATCAACACGCGCCTGCAAATA 4785606 36 100.0 34 .................................... GAAAAAAGAGAGAGAACACAACGGAAATCAGAAG 4785676 36 100.0 41 .................................... CCGTACTGGAAGCGTTCAGCGATCATGCGAAAACGGTACTT 4785753 36 100.0 38 .................................... CTCTTCTCTGAAAAACATTATGGCACTCGTCGGACAAG 4785827 36 100.0 37 .................................... ATCCAACGACGGAACTTCCCGCGCGATCAACGTCCAA 4785900 36 100.0 40 .................................... ACGGAGCTTTGGGAGCAAGAACGGGTGTTTGATTGCGATG 4785976 36 100.0 37 .................................... GAGCCGCAAGACCTGCGACACCGAGCGCAGCACCCAC 4786049 36 100.0 35 .................................... TCAGCAAGCCAACTGGCAGGACGAAGTGGCGAAGG 4786120 36 100.0 39 .................................... AATGGTTTTGCGGTCGATAATTTCTTTCCCCGTGCGCTT 4786195 36 100.0 39 .................................... CGACCATTACGAGAACTGACATCCAACCGTTGCTGGATC 4786270 36 100.0 39 .................................... CAGGATACCGTCCTTGTTCAACTCATCAAAAAATGACGA 4786345 36 100.0 38 .................................... CCTACACCAGTGAACACCACGGCACGATAACGTACAGA 4786419 36 100.0 34 .................................... CGCAGATGACGCGGTTGATCTCCGCCATTTCGTC 4786489 36 100.0 42 .................................... CAGTTACCGTTTCCCCAACGTTATACCTGGTCTTGTCTGTAG 4786567 36 100.0 36 .................................... TGAGGTTGTTATACCTGATGCTGGTGCTGGTACTGC 4786639 36 100.0 39 .................................... GATGTGGCAATCATCCTGTCTCTTAGGAGGTTTTTGCCA 4786714 36 100.0 35 .................................... TCAGGAACCTTTTGCGCTCACGATCAAAATGTTCC 4786785 36 100.0 39 .................................... GGCTGAGTTAATGGCGCGTTTGGCTTATTTGGAGTCTGA 4786860 36 100.0 36 .................................... TCAGCTCATCCAGGTTCACGTTCAACAGGTGCTTGT 4786932 36 100.0 39 .................................... TTACTTACAAACTCCATTCTTTGTCATCTCCTTTTAATA 4787007 36 100.0 36 .................................... TGTGACTTGCGTAGTGTCCACCGTCGGGTCAGCCGC 4787079 36 100.0 38 .................................... TGAAGATGGCTGTGATCGCCTTAACGAAAAAGATCTTG 4787153 36 100.0 34 .................................... GATCTCATCTGTAAAGTCTATTTGGCATCGATCT 4787223 36 100.0 35 .................................... TCTAGGGCTTGAGAATTTATTTTTGATACTATTGT 4787294 36 100.0 35 .................................... GCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 4787365 36 100.0 38 .................................... AGCGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 4787439 36 100.0 35 .................................... CATGCCAATAAATGACGGGAGCATTCCTGCTGCTA 4787510 36 100.0 37 .................................... TTCCGTTCCCACCGAAAATCTTGCGCGCATGCACGTA 4787583 36 100.0 34 .................................... GACTTGGAACGAGGCGGACGCGTTTACGTGGAAC 4787653 36 100.0 35 .................................... CGCGAGCCCTGCGGACATCGACAAGCGGCCCGGTT 4787724 36 100.0 36 .................................... CGCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 4787796 36 100.0 35 .................................... GCCGCAACGTGCGCCGGGAGAGGCGCACGTTCAGA 4787867 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 74 36 99.6 37 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TCGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGATTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : CCCCTGTCTTCTCAATCCCTTGATTCTCAGGCTTTTCTCAGCCCGTTTTCGAGCAGTCTTTTTTTAGGTACCATTTTTCTTGAAATTCAAGGAGCTTTTTTCTTTCCAACTCAGTTTGACGCCTACTCTCCCAACGCTTGCGAGCATCCTTGGCGTTTTTAGGGCTGGGAGATTGCTCGCGTCTTCATTTTTCGAAAGCATAGTGGAAATTCGAAATTATCCGTGGGAATAGACTTGTAGAGGGTCTATAATGCACACGCACGGAATATCAAAACGGCCTGTCGCCTCTAGCATACGGCCGATACTTATATCTTACTTTTTTTCCAAATACAACACAACCGCGATTTGATCCACCCTGTAGAAAATCACCACTCAAGACCTCACTCCTTTCAAGTCGCTATTATAAATATTAAAAAACCGACCTCATTCTCTTGCGAATGAAGTCGGCTCTCCACTCTGTTTCCTGCATCAAGAACCGAGGCAGTCATCCTTTCGCTTGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 5104538-5099264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026363.1 Brevibacillus agri strain DSM 6348 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5104537 32 100.0 35 ................................ CCCGTCCGCCCGTAAAAACAAGAGGTTGGACGTGT 5104470 32 100.0 32 ................................ ACGCCAAGATAGCGTTTGACATACTGGTCAAC 5104406 32 100.0 33 ................................ GGGTGTGTTCGTGTTGATTTTAACCTTATAAGG 5104341 32 100.0 36 ................................ TATACGGGATGTCCTCGATCAATTCTTCGTTGACAC 5104273 32 100.0 36 ................................ GTCTTTGCGTCAAAACAAAAACACCTCCGTGACCAC 5104205 32 100.0 34 ................................ CGCCAGCAGTTGCTTCGCGCGCTGCTCGACTTGG 5104139 32 100.0 34 ................................ ATCGTTGATTAGCTGCACGTTCACTGTCCCGCCA 5104073 32 100.0 36 ................................ AGATGCAGACCCCTCAACCGGCAGCGTGTTTCCTTC 5104005 32 100.0 33 ................................ TCAATCGTTGTCCGTCGCGGTGCGTAATCGCGA 5103940 32 100.0 34 ................................ CGCGACCAACACGTCATCCGCTTCGAGTTCGAGC 5103874 32 100.0 35 ................................ TTGCGCAGTCAACACGCGCTCCCCTTTGTGCAGTC 5103807 32 100.0 35 ................................ AACGAAGGTGCCGAGGGCGTACGGAAGTTCCAGCG 5103740 32 100.0 34 ................................ TCTTGACGATTAACGTTTAAACGTAAAGGACGGT 5103674 32 100.0 33 ................................ GACCCGATTGTCCAGTTGGTGCAGGGCGTGTCG 5103609 32 100.0 34 ................................ GACGCGAGTCATTAGCGGGCACACCGGGCAGGTC 5103543 32 100.0 35 ................................ CTCGACATACCGGCAGAGAAGCACGGGAACAAGTG 5103476 32 100.0 35 ................................ ACTTTCGAGGGATACGAAATCCTCGACCGAATTGC 5103409 32 100.0 35 ................................ GCGAATAACGGACTCAAAGGGTCTGACGCAGGTAC 5103342 32 100.0 34 ................................ CTTAGACTCGATTATGTTACGACGGATTTTTGCA 5103276 32 100.0 36 ................................ TCCACTGTCTCTACTATCGTAAAAAAAAGACTCTCA 5103208 32 100.0 35 ................................ ATTTCGCTCACTCCTTTGTTTTGTTGACTTTATAA 5103141 32 100.0 35 ................................ AATGTTAGCTGGGGTAATTGTGCTGGCGGCGGGGA 5103074 32 100.0 35 ................................ CGCCTGACCAGGCGGCGTCGCCCTTGCAAAAGCTG 5103007 32 100.0 35 ................................ TATACTTAACCGTTTGTGGCGGGAGTCTTGAGGGG 5102940 32 100.0 34 ................................ GACAGGCATTGTCTAATTTTGTCGAATTGGCTTT 5102874 32 100.0 35 ................................ CCGGATAGCCCGTTTCGCACCGCCCCTACGGCGCC 5102807 32 100.0 36 ................................ CCTACAACGTGACTTAGTAAGTAAAACTGCAAAAGG 5102739 32 100.0 35 ................................ ATTAGGCACGTGATGCGATCCCCCTATAACCATTT 5102672 32 100.0 34 ................................ AAAAATAAAAAGCCCGCGCTTGGCGGACTTTTTG 5102606 32 100.0 35 ................................ ACGCGGCGGCTGGACGAGATGTTTGGTTGCTGCGC 5102539 32 100.0 36 ................................ CCCGTCCGCCCGTAAGAACAAGAGGTTGGACGTGTA 5102471 32 100.0 35 ................................ CCCGACCCCCGGCGGCAGCCTGTGGCTGCCGCAAC 5102404 32 100.0 37 ................................ CTCCCCGCCGCCGCCAGCAGCACAATTACCCCAACTA 5102335 32 100.0 34 ................................ CCGATGTGGTAGTTCTCCCAAAGACAAAAATAGC 5102269 32 100.0 33 ................................ GCCATTGCAAAAACTTTGGAATAAGTTTTTTAC 5102204 32 100.0 35 ................................ TCCCCTTTATAAAAATAAAAAGCCCGCGCTTGGCG 5102137 32 100.0 33 ................................ ATAGACTCGGACTTGTAGCCTGCTTTGAGGCGA 5102072 32 100.0 33 ................................ TGACCAGCCCGTCGAAGGGTACTTCTGCACATT 5102007 32 100.0 35 ................................ AGATTCCCACTCAATACCTACTCCGTAGATGTGAC 5101940 32 100.0 34 ................................ ACCGGAGTTTACGGCTACGATGGAGTACCAACTA 5101874 32 100.0 34 ................................ ACCTTTTCAAAAGAGGACGACGCACTAATCATGA 5101808 32 100.0 34 ................................ TACGGCTGCAGCAACCATCCGAATTGTGATTTTA 5101742 32 100.0 35 ................................ AGAGACAATCGGCGCTCCATCTGCATCGTATCGGC 5101675 32 100.0 34 ................................ ACCGGAGAGAACCTGGGGATGGCCGGGAAAACCA 5101609 32 100.0 36 ................................ ATTTGGGTGAGGAGGAAAAAGGTGATGAGTTAGATG 5101541 32 100.0 33 ................................ GCATGAGGGCGGCAGCTCGCGCTCGATCCGCGC 5101476 32 100.0 35 ................................ AACGACTGGTACGAGAGTGGAGGTAAGGACATGAT 5101409 32 100.0 34 ................................ TATAATTATGTTTTTTAAAGGCTTATTTGTTGCT 5101343 32 100.0 35 ................................ CATGTCTCGTAAGCATGCTGCTTGATCTCGTCGCT 5101276 32 100.0 36 ................................ CTCCTGATAATGGTCGGGCAGCGGTCGAAGGGCCTC 5101208 32 100.0 36 ................................ CGTCAAATCCGCGCACAACCGTAATGACGTCGCCGT 5101140 32 100.0 34 ................................ GCCGACCATCCGCTTGATCGCGCCCTGCTCCATC 5101074 32 100.0 33 ................................ CGGGAGCTGGCGGAGGAGTTGGCGCCGTTTACC 5101009 32 100.0 35 ................................ GATCGGTGTTTACCGGGTAAAGGCGATCCTTCGCA 5100942 32 100.0 35 ................................ TGAAAAACTCCATGGTTAGAGCCTCCCTTTGATTA 5100875 32 100.0 35 ................................ GCGGATACGGCAACGACACAGAGAGCACGACAAGC 5100808 32 100.0 33 ................................ CCTCTTTGCCATGTAACCTCATCCCCCTTTATA 5100743 32 100.0 36 ................................ GCACTGTGTCTTTGTTTATTGGAGATGGCGGCAAGA 5100675 32 100.0 35 ................................ CCGGAAGAGACGCTGGAGATCATGGAGCAGATTGA 5100608 32 100.0 34 ................................ CATAGCCATTGCCGAGGGAGAGCGATGGTTGGGC 5100542 32 100.0 33 ................................ CCCCAGCAAGTTAAAATTCGCGTCGATTATTCG 5100477 32 100.0 34 ................................ TCCGGGGACAATCAAACAACTGTTCAACTTTTCC 5100411 32 100.0 35 ................................ ATCGAAACTGTAGGGCATCGCTCGCTCATCTTGTG 5100344 32 100.0 35 ................................ CAATATGGTTGCCAGCTTGGCGGATGGCGCAAAAA 5100277 32 100.0 35 ................................ AACCGTCGTTTCTTCGAGCTGGCAAGCACGAGCGA 5100210 32 100.0 35 ................................ TAAAATACTCGGCGAACTCGTCCGCCGTGTAAAAA 5100143 32 100.0 35 ................................ ACTCGGCGTCAGAGCCTGTGGGCTGTTAAACGTGT 5100076 32 100.0 34 ................................ TACCAGTTTTACACCGGCGAGATCGTGAACGGTA 5100010 32 100.0 35 ................................ TGTAGGCGATATGAAGAAGTGAATGGTGAACTAGC 5099943 32 100.0 36 ................................ TGTTTTTCGGACTGTTTCTTTGTTTATTGGTGATGG 5099875 32 100.0 34 ................................ ACATAACCGTGATCGCGATAAGTTCCGCACCCAC 5099809 32 100.0 33 ................................ AAATTGCGCCTGGTAAACTGGTGCAATAACGCC 5099744 32 100.0 17 ................................ TGCTCCAAGTACGCAAA Deletion [5099696] 5099695 32 100.0 35 ................................ CTGATCGTTCGACGTTCACGGGATACCGCAATTAC 5099628 32 100.0 35 ................................ TTTTGAGGTTTTTGTGTGTACTGGTGATAGTAAAA 5099561 32 100.0 34 ................................ AGGTAAAACGCCCCGTCGTCGTGTGGAACCTCCA 5099495 32 100.0 36 ................................ CATCTGCTGCATCAATCGTTTTATGTGCTCGATGTA 5099427 32 100.0 35 ................................ TTATCGATCTGTGGGGGGATCATCTTGAAGTTGGC 5099360 32 100.0 33 ................................ TGCGGGGCGACGGGAAACAAAGGTCCAGACGGA 5099295 32 90.6 0 .............................GTA | ========== ====== ====== ====== ================================ ===================================== ================== 80 32 99.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCTTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTTTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : AGCGTCAAATAGCCCCCACCTTGTTGCCAAGATGAGGGCTGGTCTATGCTGGGGTCAAGAGTTGAACACGTTGCAAGTTAGCGGTAACCACGGCGACCAAGGCAGCAAACTATCCAGGGTTTCTGGATTTTTCAGATCGGGAAGCTGTGGGAGTTGTTCGAATAGGTACGTCAAGTACTTGAACGGGTTCAGTCCATTCTCCTTTGCTGTTTCGATGACACTGTAGATGATTGCGCTCGCCTTTGCACCGCGAGGCGTATTGGCGAACAGCCAATTCTTTCGTCCGATCACAAACGGCTTCATCGACCGCTCGCTGCGGTTGTTGTCAATCTCGAGCCGCCCATCCTGCAAAAACGCCGTCAGCTTGTCCCACTGATTCAGGCTGTAGGCAATCGCCTGCCCCAGCAGACTTTTGGGAAGCGTTCGGGGGCGTTGCTGACGCAACCATGCCAAATAAGCGTCCAAAATGGGCTTGCTTCGCTCCATTCGGACGGTATAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //