Array 1 1308575-1307646 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081486.1 Pasteurella multocida strain Pm3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1308574 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1308514 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 1308453 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1308393 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1308333 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1308273 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1308213 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1308153 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1308093 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1308033 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1307973 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1307913 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1307853 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1307793 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1307733 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1307673 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AGTGGCGTTCCCAATCGCTGCAGAACCTTATGGTGCCGTGACGACATTAGGTACGGCTTTCCGTCAACCGAAAACCAAAAAGAATGACTTCTATACCTTGTTTGATAATTGGCTTTTAAAAGGCGAAGTCCCACCCGTGGAGCAACAGCATTATGTGATGAGTGTTTTAATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1619059-1615791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081486.1 Pasteurella multocida strain Pm3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1619058 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 1618998 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 1618938 28 100.0 32 ............................ GGATGGATTGCTTCTAAGTAGCCTTTGCCTTC 1618878 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 1618818 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 1618758 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 1618698 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 1618638 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 1618578 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 1618518 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 1618458 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 1618398 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 1618338 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 1618278 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 1618218 28 100.0 32 ............................ GCTCCAGTCGCTTTTAGTTGCGCTTCGGTGCG 1618158 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 1618098 28 100.0 32 ............................ TCGCCAATATAAGCATTAACATTCACATCAAC 1618038 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 1617978 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 1617918 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1617858 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1617798 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1617738 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1617678 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1617618 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1617558 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1617497 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 1617437 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 1617377 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1617317 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1617257 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1617197 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1617137 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1617077 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1617017 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 1616957 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 1616897 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1616837 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1616777 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 1616717 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1616657 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1616597 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1616537 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1616477 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1616417 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1616357 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1616297 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 1616237 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1616177 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1616117 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1616057 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1615997 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1615937 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1615877 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1615817 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //