Array 1 110060-110292 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KK313297.1 Mycobacterium tuberculosis MD15974 adTzi-supercont1.12, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                    	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===================================	==============================	==================
    110060	    35	 100.0	    30	...................................	AGAAGTGAGTGACGGGAACGAGACGAACAA	
    110072	    35	 100.0	    29	...................................	CGGGAACGAGACGAACAATCCGGCAGAAG 	
    110108	    35	 100.0	    28	...................................	CGGGAACGAGACGAACAATCCGGCCCCT  	
    110195	    35	 100.0	    28	...................................	CCCTGTGAGTCGAGTGAGCGGAACGAAC  	
    110258	    35	 100.0	     0	...................................	|                             	
==========	======	======	======	===================================	==============================	==================
         5	    35	 100.0	    29	GAAGTGAGTGACGGGAACGAGACGAACAATCCGGC	                              	       

# Left flank :   CGACCAGGAATACAACGGCATCATCCGGCGCGGCGCCAAGCTGCTCTACGCCTACGGCGAGGCCACCGTGCCAAAGATCACGGTCATCACCCGCAAGGCCTACGGCGGTGCGTACTGCGTTATGGGCTCCAAAGACATGGGCTGCGACGTCAACCTGGCGTGGCCGACCGCGCAGATCGCGGTGATGGGCGCCTCCGGCGCAGTGGGCTTCGTGTACCGCCAGCAGCTGGCCGAGGCCGCCGCCAACGGCGAGGACATCGACAAGCTGCGGCTGCGGCTCCAGCAGGAGTACGAGGACACACTGGTCAACCCGTACGTGGCCGCCGAACGCGGATACGTCGACGCGGTGATCCCGCCGTCGCATACTCGCGGCTACATCGGGACCGCGCTGCGGCTGCTGGAACGCAAGATCGCGCAGCTGCCGCCCAAAAAGCATGGGAACGTGCCCCTGTGAGTCGAGTGAGCGGAACGAACCTGTGAGTCGAGTGAGCGGAACGAAC
# Right flank :  CCCTGTGACCGAGAAGCCGCTGCATCCGCACGAGCCCCACATCGAGATACTGCGGGGACA

# Questionable array : NO	 Score: 2.86
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAAGTGAGTGACGGGAACGAGACGAACAATCCGGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [12,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-2.30,-0.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.74,0   Confidence: HIGH] 

# Array family : NA
//


Array 1 257-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KK313363.1 Mycobacterium tuberculosis MD15974 adTzi-supercont1.78, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	====================================	======================================	==================
       256	    36	 100.0	    38	....................................	CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT	
       182	    36	 100.0	    38	....................................	CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG	
       108	    36	 100.0	    36	....................................	TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG  	
        36	    36	 100.0	     0	....................................	|                                     	
==========	======	======	======	====================================	======================================	==================
         4	    36	 100.0	    38	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                      	       

# Left flank :   GGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAGGCGTACTCGACCTGAAAGACGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA
# Right flank :  C

# Questionable array : NO	 Score: 5.86
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.74   Confidence: HIGH] 

# Array family : NA
//