Array 1 1902508-1900953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008925.1 Salmonella enterica subsp. enterica serovar Cerro strain 87 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1902507 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 1902446 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 1902385 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 1902324 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 1902263 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 1902202 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 1902141 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 1902080 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 1902019 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 1901958 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 1901897 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 1901836 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 1901775 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 1901714 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 1901653 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 1901592 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 1901531 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 1901470 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 1901409 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 1901348 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 1901287 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 1901226 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 1901165 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 1901104 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 1901043 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1900982 29 93.1 0 A...........T................ | A [1900955] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1920523-1919214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008925.1 Salmonella enterica subsp. enterica serovar Cerro strain 87 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1920522 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 1920461 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 1920400 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 1920339 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 1920278 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 1920217 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 1920156 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 1920095 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 1920034 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 1919973 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 1919912 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 1919851 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 1919790 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 1919729 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 1919668 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 1919607 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 1919546 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 1919485 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 1919424 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 1919363 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 1919302 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1919241 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //