Array 1 52576-48520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCH010000069.1 Sphingomonas zeae strain DSM 100049 k141_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 52575 30 96.7 31 A............................. TTCCTGGATCATATCACCACCATTCACGGAA 52514 30 100.0 31 .............................. TTTTGCGCGAGCGCCTGCTCGCGACTGACGT 52453 30 96.7 31 T............................. GTGATGGGGAGCGCCGCGTTCGTGCGCGTGA 52392 30 96.7 31 T............................. CTCTCGGGCCGCTCCTCGGCGCGCGTTCGGC 52331 30 96.7 31 G............................. AGCGCTATCCTTCTTCCCCGGAGCCACCTCA 52270 30 96.7 31 T............................. CTCATCCCGCTTGCCAGAATAGGCCGGGCAT 52209 30 96.7 31 G............................. AAGCGCCAGCTCCGCATTTCCACCAATTTTG 52148 30 100.0 31 .............................. GATGCTTGCCGAAGCGGGGATCGGCTGCCGC 52087 30 93.3 31 G............................G TAGCATGAGCATGATGGACCCGCGCCTCGCA 52026 30 93.3 31 A............................A TGGCGAATGTCGATCCGATGCTGTTCGATCT 51965 30 96.7 31 T............................. ATCCTCGTGCTTGCGCAAAGGCTGCTTTTTT 51904 30 96.7 31 G............................. TCGGTACGGGCATCACGGTCGGGCGCCTGGA 51843 30 100.0 31 .............................. TGGAGAAACTGTCCAATGAAGCCCAGGCCGC 51782 30 100.0 31 .............................. TTGTTCGGGGGGAGCTGATCGTCGACGAGGC 51721 30 100.0 31 .............................. CCGTCCGCCGTGATCGTCGATAGCATGTCGG 51660 30 96.7 31 A............................. GAACCATTGCACCCGCAACGCTACGCGCCCG 51599 30 100.0 31 .............................. TCAGGGCTTCGGCCATCCGTCGACCGGTGCG 51538 30 96.7 31 A............................. CCATCCGGCCCGTGTCCCCATGGCCTTCCGC 51477 30 100.0 31 .............................. CGAAGCCGTAGAGCCGATCGAAGCGCCTACG 51416 30 96.7 31 T............................. CTGCGTGGGACCGAATAGAAGTCGGATGCCT 51355 30 96.7 31 G............................. GCTTCGACACGCTCAGTCCTATCGTTTCGTG 51294 30 96.7 31 .............................T TCGCCGTTCGTCGTCGTCGCCGAGCCGCTGA 51233 30 96.7 31 A............................. TCGGCGAGGATCAGGCCGACGATCACGCCCG 51172 30 100.0 31 .............................. GACACCAACCCCAAGACGGTCGCGGCCTTCC 51111 30 96.7 31 G............................. TCGCCAAATACGTCCCGAACGATCCCTTCCC 51050 30 100.0 31 .............................. TGGCGCTTGTACGACGCCTCGAGCTCGTCGA 50989 30 96.7 31 A............................. CGCTTCGGCGGCGGGCTTATGTCGACGCTCG 50928 30 100.0 31 .............................. TGCGCGCACTGGATCGGGAGCGAGAAGTCGA 50867 30 93.3 31 G............................T TACAATGAGGTGTCCGTGCCGCACACCTTGT 50806 30 100.0 31 .............................. GTCGCTGCGACGGGCCGCATGGGTAATATCG 50745 30 96.7 31 A............................. CCCCGATGTGCGGGTCACGCGGCCATCGAGC 50684 30 100.0 31 .............................. GGGCCGATCTGGAACGCCGCCTGCTGGAAGT 50623 30 96.7 31 G............................. GGCGCTCAGCTTTTCCTGAATTTGCGTGCCG 50562 30 96.7 31 G............................. CGCTAGCCCGCGATCGGACCGGCTGGCCGCA 50501 30 100.0 31 .............................. CGGGTTATCGCGACGAAGGGTGTGCTGATTA 50440 30 96.7 31 T............................. TGCCACGGCTGCGTCCTCCCTGTGCCTCGTT 50379 30 93.3 31 G............................T TATACAGCAGAGGCTCTCCGGCTCGCTCGCG 50318 30 96.7 31 A............................. GAGGTCTAGGTCCCACCCACTCCCCATCCGC 50257 30 96.7 31 .............................A TCCAGGGCCATACCCAGGCTTCCGCAGAGGT 50196 30 100.0 31 .............................. GATGATCACCTTTTACGGATAGCAGCCGAGG 50135 30 96.7 31 T............................. TGACAATTCGCCCGATAACAGTATGCGGGAT 50074 30 93.3 31 G....................A........ GAAATGGGCGAGCGGGCAAAGAACACATTGT 50013 30 96.7 31 T............................. TCGACCTCTGCACCGACACGCCAGTTCTTGA 49952 30 96.7 31 A............................. TGGCGGCAGCACCGGTTGCTCTCCGTCGAAC 49891 30 96.7 31 G............................. GCGCGGACGCCTGCCCAATGATTAGCGTCAG 49830 30 100.0 31 .............................. CCAACGCGGGCCGTGACCTTAGCCAGGCCAT 49769 30 100.0 31 .............................. TCCCCATAGGCCCGATTGCAAATTTCGCTCT 49708 30 93.3 31 G............................G ATGGCCCCGGCCGCAATGGCGATTAGGCCGA 49647 30 100.0 31 .............................. GATCCTAGATGCCTTCATCGCGTGGGGCATC 49586 30 96.7 31 A............................. AGATCGAGACGATCGACAAGGCGCAGACTGA 49525 30 96.7 31 A............................. CCACACAAGCGACGCCAGTTTGACGACGCGA 49464 30 100.0 31 .............................. GGCTGACCAGCATGGCGATGGTCGCAGAGGC 49403 30 96.7 31 T............................. ACGCCTGTGCCCGGTCGGAGCGCTCAACTTC 49342 30 100.0 31 .............................. ATGGCTCAGCCTTCCACGACCGAGATTTCGT 49281 30 100.0 31 .............................. CCGGCCTGCTTTCTATAGAGGGCGACGTTAT 49220 30 96.7 31 T............................. GGCACCGCTGCCCGGCTTGACGTGCGAGTGT 49159 30 100.0 31 .............................. GGATCACCTCCTTCCGACTGAATGGCAGACG 49098 30 96.7 31 G............................. AACACGCGCTTCGTCGACGGCTATTTCACGG 49037 30 96.7 31 G............................. TATCGACTGGCCTCGTATCGAGCTCGAATAC 48976 30 96.7 31 T............................. GTGTCGCGGTCGAGCCGCTGGACCAGCCTAC 48915 30 96.7 31 ........T..................... ATGTAAGGCATGCTTACAAGTTCCTGAAGCC 48854 30 96.7 31 A............................. ACCCCTGCCCCTCTGATCGCATCCCGAGCCC 48793 30 100.0 31 .............................. CAGTGGACGTTCCAGACGTCTTTCATGGTGC 48732 30 93.3 31 A.................A........... CACCAATGGCCAAAGCCAAGCCCAGAACTGC 48671 30 100.0 31 .............................. GCCGTATTGTCCCAATACAGCTTCTGACCCT 48610 30 96.7 31 G............................. CCACCTTGGCCCACGAACCCGGCCGAGATGC 48549 30 96.7 0 ...........................G.. | ========== ====== ====== ====== ============================== =============================== ================== 67 30 97.5 31 CGGCTCCCCCGCACACGCGGGGATGGTCCC # Left flank : CCAGCGTGGCGTGATCCCGGGCATGATCGACCGGATCAAGACCTTGCTGATGCCAGGCGGTGTCGACGGAGAAGGTGACGGTGCGGACCAGCCGCCCGCTCCGGTCAATAGCTGATGCCGCTGACCATGGTCATCACCCGCGACGTCGAAGATCGCTATCGCGGCTTTCTGGGCTCGGCGATGCTGGAACTCGCGCCCGGCGTCTATGCCCAGCCCCGCATGAGCGCCGGCGTGCGCGCCCGCATCTGGACCGTCGTCGAGGAATGGCACGCCCGCCTGCGCCGGGGCAGCATCGTGATGTGCTGGGCCGAATCCGCCGCCGCGGGTGGCCTGGGTCTCCTGACCCTGGGCGAGCCGCCCAAGGACGTGGTATCGCATGAAGGCATCCTGCTCGTGCGCCGCGCCTTGTCCTGCCGTAATCCCGCCGAACCGACACCGTAAACCTCGGCTCGACAGAGGGTCTTTGACATTGTGAAGAAAATCAACGATCTGCCTGGCAG # Right flank : TCGCCAGTACGCTCGATCGGGATCGGCACGCACGCCCCCCCACGCGAAGGGGCAATCGGATATCGGCGCTTTGTTCGTGAAGATCGGACACGAATGGCACTACGGCTTTCCGCGGTCCGCGGAAATTTTAGATCGCCACCGGCCCAATCTTCGGTGCGACCCGGGGGGCGCTTGACGGTCGCCACGACATCCTGTGCCGAACGCCTGATGCGCAGGGCACGACCGACAGTCGCCCCTCACCGCGCACGCCGCCCGACCAGCCGTGCCCAGGCTCGCCGACGCGCGGCGGGGTCGAGGGTCGCGAAAATCCGCCGTTCCCGCGCCGAGAGAGCAGAAATTTGCCAGCCATAGGCCGCCATGCATGCCTCCATCGTCTCATCCGGCGCGGCGCCCTGTCCGCCATTGTCGAGCCGTGCAGCACCGTCCGGGCGCTCCGCGCCCGCCGCCGGACCGGTGGTGATGAGCCGACATCGCCGCAGATCGCGCTCGACCTCAGCCAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTCCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //