Array 1 872101-873199 **** Predicted by CRISPRDetect 2.4 *** >NC_006461.1 Thermus thermophilus HB8 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 872101 36 100.0 35 .................................... TCGTAAGCGATAACGGGGAGGGCGACGCCAATCGC 872172 36 100.0 41 .................................... GCCACGGCGTACGCCGCCGCCCAGAGGGCCTTCTGGTTCAG 872249 36 100.0 39 .................................... TTTGCGAGGATTACCCCCTCGGTGGGCCCGAGGAGGTTC 872324 36 100.0 39 .................................... CACGTCCCTCACGACCGAGGCCAGGGACGTCTTCACGTG 872399 36 100.0 38 .................................... CTCCCTCCTTTCCCGCCTATCTTACTCCCCCATGAGGT 872473 36 100.0 42 .................................... ACTTCAAAGTGAAGGAGCCTAGGGGCTTGGTCATAGACTGGC 872551 36 100.0 39 .................................... GGCGAGGAGCCGCCGCACCCCGATGATCTTGCCGTCGGA 872626 36 100.0 40 .................................... CATTGGCGTGGGTGCCACCCCGCCTACGCCGATGCTACGG 872702 36 100.0 43 .................................... TTTGCCCTTCTAGGGCCTTCTGGAGTTCGTGAAGGTTCGCCAC 872781 36 100.0 40 .................................... CTTCAGGAATGGGCACGCCCACCTGCCGGAGAAGTTCAAT 872857 36 100.0 41 .................................... CTAAGCAGGAGGAGGCCCACGGCCTGGTAGAGGCCAAAATA 872934 36 100.0 42 .................................... ATCTCTAACCAGGCTACGGAGAGGATAGTGGAACTCTACCGG 873012 36 100.0 39 .................................... TATCAAGGGTCTTCCGCAAGCGGAAGGCGCGCGGGGAGT 873087 36 100.0 41 .................................... CAGCCCGCTCCATCTCGGCCAGCTCTAGGGCGTGGGGACCA 873164 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 99.6 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAAAAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGGGCTGGCAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCGCCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCCTTCCTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 874397-874735 **** Predicted by CRISPRDetect 2.4 *** >NC_006461.1 Thermus thermophilus HB8 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 874397 36 100.0 40 .................................... CACCTCACCTCCACTCGCTTATCACGCGCCTCCACCAATG 874473 36 100.0 41 .................................... GGGGTCATAGATCCAGTCCCTAGGCGGGCCGAGGCGAATCC 874550 36 100.0 40 .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 874626 36 100.0 37 .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG 874699 36 94.4 0 ...............................A..T. | T [874732] ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACTCGGTTATGGCCCTCCAAAAGGCCCTTGTCTTCTCCA # Right flank : CTTGCCCATCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCTCTTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 18304-18044 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 18303 36 100.0 40 .................................... ACCAGGGTGGGGGAAACCTTCTCCAAGGCCTTCTCCAAGG 18227 36 100.0 38 .................................... CGCTTAGGTCCGCCGTCAGGGCGGGCGACGATGGTCGC 18153 36 100.0 38 .................................... ATGAGCCCCTTTATCTCCCGGTCGTCGTTGACAACCGG 18079 36 91.7 0 ................................ATG. | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 97.9 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TCAGGCCCAGGTCGTCGTGGTGGAGGATGAGGACCCGCCGCCCTCCAAGTCCGAGCCGCTCCAAAAGGTCCACGGAAAACCTCCTTTCCCCGCCTGGCTTCCATTCTAGCCCAGGTTCGCGCCTTCCCAAACACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACGGGCGTTTTTTACGCTTTCACAAAGCGAAGTAAGGTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGTCCCTTCCTCTTGTGGCTTTCTATCGGTGTAAACCCTCAAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTCCC # Right flank : TTTGACCCTTCGCGGGCGTGTGGCCTCAAGAGGTACTCCGGGCTCCCGGGCCGGTATCGTGGGGAGCGAGGACCCGCCCGAAGGTGGACGGTGTGGCGGTCTTTGCGGGTTGACCTGAAGGCGAGGAAGGCCTCCTGGCAAGAGGTTCCGCCCGAGGAGGTGGCCTTCGGCGGGCGCTACCGTACGGGGCAGGCGCTTTGGGAGCGGGAAGCCTACCGCGTTGACCCCCTCTCCCCGGAAAACCCCCTGGTCTTCGTCGTGGGGGCTCTTCCCCCTCTGCCATCTCCCTGAGAGATGGCATTGTCTTTCCGCTATTGAATGACTATCATTCAAGTATGGAAAGAACTTTCCTGCCCCGCGCCGCCGGGCCCCTCCTGGAGCGGCTTCTAGTGGCCTGAGGGGGCTTTCCGCCCCGGTCCATCCCCAACCTTCATGTGCGTGGGTGCTGGGCCAAGCAGAAAGTCAAGTCGCGATTTTTGTGGGGTTCTCTGAACCCGGAC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 133766-133954 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 133766 36 100.0 41 .................................... ATGTGGCAGTCCAACGACGACGGCTTCGGCATGTTCTTTCG 133843 36 100.0 40 .................................... CATGATGAGGGCGTGAGCGGCCTCGGGCCGGGACTGAAGG 133919 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 98.1 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCCCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGCGCTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTATCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTCAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGCGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATTGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTTTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTTTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 135156-136099 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 135156 36 100.0 39 .................................... TGCTCTAATCGGGCCTGTTCGGCTATGGCCTTGGGGCTC 135231 36 100.0 40 .................................... ACAACCCGCCCAAAGGGAATGCCGCTAGCCCCAGACACAT 135307 36 100.0 36 .................................... CAGTCCCACCCCTCGTGGGGGGCGGCCCTGTCGTCG 135379 36 100.0 39 .................................... CGCACCCTCCTTCCGAGCTTCCACCCGGCGTACATGGCC 135454 36 100.0 39 .................................... TTCAGCAGACCGAAGTGTCTTCCGTTGCGAACAGTGTAG 135529 36 100.0 42 .................................... CCTCATCAGCGCATCTAGAGCCTGAATTATCCTCATTTCTTC 135607 36 100.0 40 .................................... GCCATCACCGTGAGGCCGCCCTCCACCAGCTCCCCCTCCA 135683 36 100.0 40 .................................... TTTCTTAATTACGAGCCAGTCATTCGGATAAACCATGAGA 135759 36 100.0 39 .................................... TGAAAGTTTCGGTGGTCCCCCCCGCCCTCCACCAGCGGA 135834 36 100.0 40 .................................... CCGCAGCTGGGGCAAGTGCAACCGCAGTAGCTCATACTCC 135910 36 100.0 40 .................................... TTGGCGGTCAGGGTTTGGTACCGCACCGTGTTCGGCGTTA 135986 36 100.0 42 .................................... TTCTTGATTATCCTGACCTTGTCCTTCATCTTTGACCTCCTT 136064 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 99.8 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGCCTTGCGGAAGGCGGCGAGATGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAAGCGCCCGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTAGGCAGACCTCTTCCCACTCCGTGAGCGGGTATGGCATG # Right flank : CTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGCAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTTTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTGCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCAGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCGTCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 144129-144842 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 144129 36 100.0 41 .................................... CGGAGGGGCCCCCTTCTCCCCCCGGGGCGGCATTTTCCCGG 144206 36 100.0 42 .................................... TCCCGAGGCCCGGTAGTGGGCCGTTGACCTCGGGCGCCTCCG 144284 36 100.0 37 .................................... GACCTTGAGGAGGGCTCCGAGTCTTTTCAGGGCGGGT 144357 36 100.0 38 .................................... AACCCTCCGCGCCATCGCCTCCCGCCTCTACCACCTCT 144431 36 97.2 40 ...................T................ CCGTAGATAAGGCGCCCGGGGACGACCACGTCAAGGCGCA 144507 36 100.0 38 .................................... CGGGGATGTAGTCCCCGGAGCTAGCCGGGGGAGGACCT 144581 36 100.0 42 .................................... GGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTATTCAAGAT 144659 36 100.0 37 .................................... CCGGGAAGGCCGTGGGCTCGGGCACCGCCGCCCCGAG 144732 36 100.0 39 .................................... CACAGAGCGGCCCTTTGGGGTGGGTTAGAAGAAGAAGAA 144807 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 99.2 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGCCCGGTCGGCCACCTCCAAAAGCCCCTCCTCGGCCAGGGCCAGGAGCAGGGGGCCTCCTCCTCCGGGAGGAGGTCTAAGGCCAGGCGGAGGACCTCCGCCTCGGTGCGCCCCGTGGCGCGGGCTAAGCGCGTGCGCCTTTCCTCCGGGGCCAGGGGCCACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTCTATCGGTGTAAGCCCTCAAAAACCCTCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 146042-146983 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 146042 36 100.0 42 .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 146120 36 100.0 44 .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 146200 36 100.0 40 .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 146276 36 97.2 36 ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 146348 36 97.2 37 ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 146421 36 100.0 37 .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 146494 36 100.0 37 .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 146567 36 100.0 40 .................................... ATTCTCCAACGAACCATGAGATTCACCCCCTTTGAGATTC 146643 36 100.0 38 .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 146717 36 100.0 40 .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 146793 36 100.0 41 .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 146870 36 100.0 42 .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 146948 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================ ================== 13 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTGGTCTCGGAGGGGGTGCGGTTGTGAGCCGGGCCCTGA # Right flank : CGGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGCACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 190948-189507 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190947 29 100.0 32 ............................. ACGCCACCCGCTCCTACTCCGAGGTGACCCGC 190886 29 100.0 32 ............................. ACGATTTGGCCGGGGCCCTTTACGAGCTCTCT 190825 29 100.0 32 ............................. GTAGACCTGGCCCGCTTCGCGGCCGCCACTCC 190764 29 100.0 32 ............................. AGGTCATCGCCGCCAACATCGCCTATCTGCAA 190703 29 100.0 33 ............................. GCCGGACGCAGAATATAAGACGACCTTTGTCTA 190641 29 100.0 33 ............................. TAGGCAACCTCCTCAACGGGCTGATTCTCCACC 190579 29 100.0 32 ............................. CTGACAGCCCCCACCCGTCACAGGAGGCTAGG 190518 29 100.0 33 ............................. GGCCCTATCCAGTTTATCCTCAAGCTTGCGAGC 190456 29 100.0 33 ............................. GGTTAGCGCTATAAGCCCAAGGCCAAGGGGGTG 190394 29 100.0 32 ............................. ACCTCGTTGGGCGGCCAGAGAGAACAAGAGGG 190333 29 100.0 33 ............................. GGGGCCGCAGACCTGGTGGCCTGGTGTGGAGGC 190271 29 100.0 33 ............................. GGGCCGTAGTGCCTTGGGGCTCAGCAGCGCCTC 190209 29 100.0 32 ............................. AGGGTACTCAACGAGGCGGACGACCCACTCGG 190148 29 100.0 32 ............................. CTGGCCCGGGCGGCCTACCTGTGGCTCCTCCG 190087 29 100.0 33 ............................. CCTTTAGCCCAGCCGTGGCCCAGGACCCGGGCC 190025 29 100.0 33 ............................. CCCTCCGCCGTCCTGCAGGCCATGCTCCGGGCC 189963 29 100.0 32 ............................. GTGAAAAATCGGTTCCCGGCGTAGACCTCCAC 189902 29 100.0 32 ............................. CTTAGCCATTCGGCACCCCCTCCGGCCACGCC 189841 29 100.0 31 ............................. GCGATGTTGCCGGTAGTAATAGTAATGGCAA 189781 29 100.0 32 ............................. CCCCTGACACGACTCCGGGACGTGAAGCGGTC 189720 29 100.0 33 ............................. TCCTCTAGCAAGGCGCGCCGCTCCCGCGGGGGC 189658 29 96.6 33 .............G............... GGTCTTACGACCCCTCCGGGCCGGGCCTCCGGC 189596 29 96.6 32 ...........A................. CCGGAGGAGGTGCCCGACGAGCTTGCGGACGA 189535 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATAGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAGAGCCCCCGGGCCAGGCGCTCCACGGGAAAGCCGAGTTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCATCCTGGCCTTTCCCCCTCCCCCGTTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTAAGCGGGCGTTTGTGCCGTCCTGGTCATGT # Right flank : ACCCCCTTCGGGCAACCCTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTCGCCTGGCCCAAAGAGCGCTTCCACGCCCTCGCCGCCCGGGTGGGCCTAAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTTCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTCCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGAGCTTTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGCCCTCATGGCCCTCCCGGCCAGGCCGGGGGAGGTGGACCCTCGCCTCCCCGTCTGGTTCTTCCCCCCTGAGCCCTGGGAGGAGGCCCTCCCCATGGCGGTGGCCCGGGCCCTGGTCCAGCTCTACACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 200811-202078 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 200811 29 100.0 32 ............................. GCTGGCCTGCAGGACCTCCAGCATCTGGCGGG 200872 29 100.0 33 ............................. GCCCTAGACTCGGGCTATCCCGCCATCAGCGGC 200934 29 100.0 32 ............................. CCAGCGGATGGCGTCCTCATAGCGCATGCGCA 200995 29 100.0 33 ............................. GCAACCCCAGGGTTCAGGGGTTCAGTCGCCCAT 201057 29 100.0 33 ............................. TTCACCCAGCTTGACGGCGCCATCATTTCCCAC 201119 29 100.0 33 ............................. GCCATCCCGAAGCCGTGCGGGTTGCCTTCCCAC 201181 29 100.0 32 ............................. CTATCTTTCGCGAACTACCGGGCTTGGGCCGC 201242 29 100.0 32 ............................. TAGGCCATCGTGTCTAGGGAGGGGTTAGACCC 201303 29 100.0 33 ............................. GACGGTAGACCCCGAGACCGGGGAAATCCTGGA 201365 29 100.0 32 ............................. GAAAGCCCGAACTCATGGCGGACCGCGAACAC 201426 29 100.0 33 ............................. TGCCCCTCTGGCGGCCTAAGGAGGGTCATAAGC 201488 29 96.6 34 ............................A GACGACATCCTTAGCGCCCTCCTCATGGCCCTAC 201551 29 100.0 32 ............................. GTTCCGGCCTCCACCCTCCGGTACGCGGAGAA 201612 29 100.0 33 ............................. ACCATGAGCGGCGAGTTAGGGTGCGAAATCGGG 201674 29 100.0 33 ............................. GAGGCTCGCGGAGAAGGCCGCCACCTGCTCCCC 201736 29 100.0 33 ............................. TCCGACCCGCGCCGCCTCCTCTCTCTCTCCCTG 201798 29 100.0 33 ............................. ACTCGGGAGCCAAGACGTAGGTGGAGAACCGCC 201860 29 100.0 34 ............................. GACATGACCCCCGAGCAGCGCCGCGCCCTCAAGC 201923 29 100.0 34 ............................. GTGGAGTCTTCCCCTTCCTCTTCTGGCCCCCAGC 201986 29 100.0 35 ............................. AGCTCCCGCTTGAGCTCGTCCAGGAGGTACTTCGC 202050 29 93.1 0 .............A...........G... | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.5 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : GGACCCCACCCGCCCCGGGGGGCTTTGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGACCTCACCCGCTTCCTGGTAGAGGTGGACACCGGGGTCTTCGTGGGCCGGGTCAGCGCCACGGTGCGAGAGCTCCTTTGGGAACGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTCGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTTCTGCGGGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCCAGGCAGGTTGAGAGGTACAAAAAACGCCTTGCCAAGGGTTCCGAAGGGGATCTTGAGAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTCGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCCTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGCTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 228238-227324 **** Predicted by CRISPRDetect 2.4 *** >NC_006462.1 Thermus thermophilus HB8 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 228237 36 100.0 41 .................................... TGGGTTGTGGAAAGGGAGGCTGAACAGCACAACCTAATCCT 228160 36 100.0 37 .................................... GTTGTAGTCCACGTTGTCAATCTGGCACCGCTGCCAC 228087 36 100.0 36 .................................... AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC 228015 36 100.0 36 .................................... GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC 227943 36 100.0 36 .................................... CGGGCCCAGCCCAGCTACTCCCCGGCGGCCCTCCTG 227871 36 100.0 39 .................................... TGAGTGATAAGCATCCTTATCGCCCTTTTGGTCTTTTGG 227796 36 100.0 36 .................................... CCTCCTCTTCACCACGTCCGCCCATGTGATGTACCC 227724 36 100.0 36 .................................... CCCACTACGGCCACCCTATCGCTATGCCCTATCCGC 227652 36 100.0 37 .................................... AGGAATGGGCGCTTCTACGCCCTCATCGCCGGACTCC 227579 36 100.0 36 .................................... CCATCCGGGGGGGTATGGGGTTGGGGGGTGAGCCCC 227507 36 100.0 40 .................................... GGCGAGTGCGTTGTTCGCGGGGTGAAGCCCCCCCTTGGGA 227431 36 97.2 36 ..........T......................... ATAGGATGAAGGCCGAAAGGAGGGTGAACAGCGATG 227359 36 83.3 0 ..........T...T.................GCCA | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.5 37 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGATCAGGGGGCAAGATACATGTACCCGGTCGTCAAACCGGAGGCGTGAAAGGGGGCCTGTATTGCGAGGAGTTATCGTTCGCAATACTCATAAAATCCGACCGGAATACTTGACTTTTACCTCCCCCCTGGCTAGCCTGGCCTCCAGGAGGTGCGCCCGTGTTCGTGACGATGAACCGCATCCCCGTGCGGCCCGAGTACGCCGAGCAGTTTGAGGAGGCCTTCCGGCAGAGGGCCCGGCTCGTGGACCGGATGCCGGGGTTTATCCGCAACCTGGTCCTGAGGCCCAAGAACCCGGGGGACCCCTACGTCGTCATGACCCTCTGGGAGAGCGAGGAGGCCTTCCGGGCCTGGACAGAAAGCCCCGCCTTCAAGGAGGGGCACGCCCGGAGCGGCACCCTGCCCAAGGAGGCCTTCCTGGGGCCGAACAGGCTGGAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //