Array 1 290541-287797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016439.1 Streptococcus thermophilus strain CS8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 290540 36 100.0 30 .................................... AGAACGTATTCCAAAACCTCTTTACGATTA 290474 36 100.0 30 .................................... TTAACTGTTATCAAAATGATAAGATAGTCT 290408 36 100.0 30 .................................... CGTTGATGTTTATTCAAGTAAAATAATTAA 290342 36 100.0 30 .................................... TCCTTTCACGGGTAGCACACTAACATACAC 290276 36 100.0 30 .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 290210 36 100.0 30 .................................... TTTATTTCCTTGCGATAACGTTCCACCTTT 290144 36 100.0 30 .................................... AGATTATAAGGAACACAACCAACTATATAG 290078 36 100.0 30 .................................... ACGACATCAAGCTGATTGTCTTCTACATAA 290012 36 100.0 30 .................................... TTTGGAATACTGAATGTTTTACTGAAAATC 289946 36 100.0 30 .................................... ACACCACTATCTTTTCCTCCTGAAAATGAA 289880 36 100.0 30 .................................... GTAATTCCACGAAATTATCAACCTTATGCA 289814 36 100.0 29 .................................... TTGGAGGATTGCCCCATATTCCCAAGAGT 289749 36 100.0 30 .................................... GAGAGGCGTTAAATATAGAAATGCAAGATT 289683 36 100.0 30 .................................... TTTTAACGTCATCAGTCCACCGCCTTAAAT 289617 36 100.0 30 .................................... CACCTCTTTCGATGGAAAGGTATCCTTCTA 289551 36 100.0 30 .................................... GACCAAAGTTTGATTATAGAGCTATACACC 289485 36 100.0 30 .................................... ACCATCATTCTTACCATTACAACTGTAATG 289419 36 100.0 30 .................................... ATACGAATTCGGTTCGCACAATTACAATTC 289353 36 100.0 32 .................................... TATCAACGCAATCATTACAACAACTTCAAACA 289285 36 100.0 30 .................................... ATCTACGTGTCAATACATATCACAAAACAG 289219 36 100.0 29 .................................... ATTTTTAGAAATTTCTGATATAATAATGA 289154 36 100.0 30 .................................... TTGTTGGAACAAGGACGACTTGGTAAACTA 289088 36 100.0 30 .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 289022 36 100.0 30 .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 288956 36 100.0 30 .................................... AACATTTAGGGAATGAAATTGATAAGACTG 288890 36 100.0 30 .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 288824 36 100.0 31 .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 288757 36 100.0 30 .................................... AAGGGTTGAAAAATGTTGGTATATCAAACG 288691 36 100.0 30 .................................... TTCTGGTAGTGGATTTAGTCAAACAGATGT 288625 36 100.0 30 .................................... TCCATAGAGCGTCTTAAACAAAGAATAGTC 288559 36 100.0 30 .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 288493 36 100.0 30 .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 288427 36 100.0 30 .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 288361 36 100.0 30 .................................... AACATTTAGGGAATGAAATTGATAAGACTG 288295 36 100.0 30 .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 288229 36 100.0 31 .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 288162 36 100.0 30 .................................... TTATGATTGAATGACATGGTTGTATAAGTA 288096 36 100.0 30 .................................... TTTCTTTAGGAATACCAGGGAGTTCAGCTT 288030 36 100.0 30 .................................... TGGCAGAGATTACACAGCAACGGAAACAGC 287964 36 100.0 30 .................................... GGGTATCATTGTATCTAGTGATGGACCTGA 287898 36 100.0 30 .................................... ATTTGAAAAATGCACAACAGCGTTTGATAG 287832 36 91.7 0 .........T........................GT | ========== ====== ====== ====== ==================================== ================================ ================== 42 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGAGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGATATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCAATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGTCTAGTTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //