Array 1 189880-191651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRG01000010.1 Escherichia sp. MOD1-EC6819 MOD1-EC6819_10_length_234626_cov_28.3551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189880 28 100.0 32 ............................ ATTTGTCTGCGCGGGTCATGCGGGGTTTACCC 189940 28 100.0 32 ............................ GCAAATCTGGCAATCGAGGCCGCGTTTATTCG 190000 28 100.0 32 ............................ TTCAGTAACAGTAATATGCGATTCTTTATGCG 190060 28 100.0 32 ............................ TCGAGGCGACAGAAACATTCTACACGTTAGAA 190120 28 100.0 32 ............................ GATTGCATCGCGGCGTATACGGCTTTCTCAAT 190180 28 100.0 33 ............................ GCTTTGTCAGAAGCGGGTGTGTTATTTCCAAAG 190241 28 100.0 32 ............................ ATTGAGCGTGCAACCGAGCGCCAGATTAACGT 190301 28 100.0 32 ............................ AGAACGGGAAGGCGTGCAACTTAGGAGAGTTC 190361 28 100.0 32 ............................ TTGTCTGACGGTCACTGATCGGCACGGTGTTG 190421 28 100.0 32 ............................ GTAACAATCAACGTGGAGTATAAATAATGTTA 190481 28 100.0 32 ............................ TTGAGGCTACAGAAACGTTCTACACGTTAGAA 190541 28 96.4 32 .......................T.... GCAACGTGGACAAATACGGCAATCCTCATATA 190601 28 100.0 32 ............................ ACGCCGAAGTGTTGGGCATCAAGGATTCTCCA 190661 28 100.0 33 ............................ AGCGGCATCGACTGCGCAACGGGGTTCCTGTCC 190722 28 100.0 32 ............................ GCTAAGGTAGAAGAGAAAGAACCTGAAGTTGA 190782 28 100.0 32 ............................ GTTTTGATGTATCGAAACTTACCGCTTCTACT 190842 28 100.0 32 ............................ CAACATCAGCTCCCCGGCGTCGAGCATCTTTT 190902 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 190962 28 100.0 32 ............................ AAATCTGATGGGCGGCAGAAGTAGTTTTACCT 191022 28 100.0 32 ............................ GTACAGCCGGTCGCAGTATCACGACGGGCAGG 191082 28 100.0 32 ............................ TCCCAGTTCTGCAGATATGCATCCGATACCGC 191142 28 100.0 33 ............................ GGAGAACGGCGGGAACGCGGTAGCACCAATGAT 191203 28 100.0 32 ............................ CAGCACGGTGCGTCCATCAAATTGACCGGTGG 191263 28 100.0 32 ............................ TCTTATTGCCTCTTATCGCCTGGACTGGTTCC 191323 28 100.0 32 ............................ TGGAAAGGGGCGAGCTTACTGTCAACGACGAT 191383 28 100.0 32 ............................ TGCGCACGTTCATCACATGCGGTGCAAATAAT 191443 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 191503 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 191563 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 191623 28 89.3 0 ....................T...C..T | C [191646] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAAATGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 200520-201446 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRG01000010.1 Escherichia sp. MOD1-EC6819 MOD1-EC6819_10_length_234626_cov_28.3551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 200520 28 100.0 32 ............................ GGACTTCATCGCAAAACACGCGGTAACGCAGC 200580 28 100.0 32 ............................ CGTCTTTATCACCCGATCTCCGGTATCGAAAT 200640 28 100.0 32 ............................ AGGAGGAGGAGCGTAATCGCCTGACGCTGGAA 200700 28 100.0 32 ............................ GCGCCTCCGCGACGCAATTAACATGGCAAAAT 200760 28 100.0 32 ............................ GCTCACAATCCCGCGCTCATACCCCCACTTGT 200820 28 100.0 32 ............................ GGCATGTAAACATCAGAGAGTTGTCTTAATTT 200880 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 200940 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 201000 28 100.0 32 ............................ GGTACAGCTCCAGCATTAATCCCCACCAGCTC 201060 28 100.0 32 ............................ AGTTTGCTCTGAGCATATTCAAAGCGGTAATT 201120 28 100.0 32 ............................ TGAGCATCGGAGCAAAAGGACGAGTTATGGAT 201180 28 100.0 32 ............................ AAAGTGTCCCTTTATAGCCTTTAGCCCGTGCC 201240 28 100.0 32 ............................ ATCCACCGGGCCTGATGACACGCTTTGCACGC 201300 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 201360 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 201420 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //