Array 1 130269-132022 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYJ01000026.1 Streptococcus agalactiae strain NNA009 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 130269 36 100.0 30 .................................... TAAACAAGTTGAAATTGAAAATAAGAAAGA 130335 36 100.0 30 .................................... GAGACCATTTGTGTTAAATCATTATCTTGC 130401 36 100.0 30 .................................... GCCCTTGTATGTTAAATCCGCAAGATTTTA 130467 36 100.0 30 .................................... TTATTTATAATTACGATATCAAAAAGAAAG 130533 36 100.0 30 .................................... TTTCGATGGACAAATATCTTTAAACAATAA 130599 36 100.0 30 .................................... TTTTAGTGGTGGTTCAAAAACGTCCTCGTC 130665 36 100.0 31 .................................... TTTGGTTAAAAAGATAATCCGCAACTTCCTT 130732 36 100.0 30 .................................... TTGTTTAGCAACGTAATTTAATTCAGCATT 130798 36 100.0 30 .................................... TATCAGAATTAATCTTAGCTAAATAGTCCT 130864 36 100.0 30 .................................... GAAACGAAAAAGCCCTCATGGCTTCAATGT 130930 36 100.0 30 .................................... TGAAGATTTAACAACAAAACATCCGCTTAT 130996 36 100.0 30 .................................... CTGTTTTTTCACCTTTTTTATAACCAAGTA 131062 36 100.0 30 .................................... TAATTAAAAACAAAAAGCCCCAAAACCTGT 131128 36 100.0 30 .................................... TATTGCTTATTACACCTCGCGCAGAGGTGT 131194 36 100.0 30 .................................... TCCTTTCTTTAGATTCCATGATAACCCTCT 131260 36 100.0 30 .................................... TAAAATTAATTTTAAATCACTATTCGGATT 131326 36 100.0 30 .................................... CGAGTGCTAGAAAACGGGGCATGGAGTGGT 131392 36 100.0 30 .................................... AGTCAATACTTCACAATTTTCCAGTTGTGG 131458 36 100.0 30 .................................... CAATCCGCACCAGCGGTAGAAGATACTGGT 131524 36 100.0 30 .................................... TTTTATTAAGGATAGTGAGTTGAAGCGTCT 131590 36 100.0 30 .................................... TCACACAAGAAGAAGCTTTATGGCTTACTT 131656 36 100.0 30 .................................... ATCAGATTTATATTTAAAAGCTAGAGAAAT 131722 36 100.0 31 .................................... GAAGTTTCTACAGCTATCAGACAATCAACAA 131789 36 100.0 30 .................................... ACTTGTTAGACGAAGAAATGCCTTACTTCA 131855 36 100.0 30 .................................... ATGACCCTGCTTTAGGTAGACGTGTTGGTG 131921 36 100.0 30 .................................... AATCGTAGTAAGTGATAGCTCTTCCTTCAA 131987 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CTCCTCTTTCTATGTTTCAATTGCCAATTTTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26509-27134 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYJ01000028.1 Streptococcus agalactiae strain NNA009 contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26509 32 100.0 34 ................................ TAACTTTGTTAAGTAGCTTTGTTTGGTTTCTTCT 26575 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 26641 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 26707 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 26773 32 96.9 35 ....A........................... AGGTGGTATGTTTAAAATTTTTGCATCTTCAATTA 26840 32 100.0 34 ................................ GTCGTAAAGACGTAGCATATCACTAATTAGATCA 26906 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 26973 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 27039 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 27104 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.5 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //