Array 1 15765-15125 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LBNF01000031.1 Corynebacterium otitidis strain TD1 PROKKA_contig000031, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     15764	    29	 100.0	    32	.............................	GCCATCGTGAACGGCTTCTCCCCAGAGAAATC	
     15703	    29	  96.6	    32	............................G	TAGATCTCGTTCGGGTACGGGTGCCGCGAGAA	
     15642	    29	  96.6	    32	............................T	GATCGGCACCCGGCGCGCCCCGGCCTTAGTTT	
     15581	    29	 100.0	    32	.............................	GACCAGAAGAGAACCATCGCCACCCTCATCGC	
     15520	    29	 100.0	    32	.............................	AGCTTGTTGCGCCCCGTATCGATACCGGCGCG	
     15459	    29	  96.6	    32	............................T	CCGGCGATCTTGGCGTTCGACGTGAACTGGAG	
     15398	    29	 100.0	    32	.............................	TCTGTATGGCATGACGTCGCGACTGTAAACCT	
     15337	    29	  96.6	    32	............................G	AAAGACGACCGGCCGTCCTGGGAGCGGTACGA	
     15276	    29	  96.6	    32	............................T	TGGGTGGAGGGCCGCGTTTGGCTTGAATGTGG	
     15215	    29	  89.7	    32	.G.........A................G	GAGTACCCGGCGTGGTGGCGTGCGGTGAGCGT	
     15154	    29	  89.7	     0	....G..................T...T.	|                               	C [15129]
==========	======	======	======	=============================	================================	==================
        11	    29	  96.6	    32	GTCCTCCCCGCGCCAGCGGGGATGAGCCC	                                	       

# Left flank :   GCGCTCGTGAACTTCTACCCGCCCGGCTCCCACATGGGCATGCACGTCGACGGGAACGAGGAGTCCGGCGCGCCGGTGGTGTCGCTCTCGATCGGGCAGTCGGCGCTCTTCCGGATGGGCAACCCCGACAACCGGGGCCGCCCCTACCGGGACGTGTCGCTGCTCTCCGGGGACGCGATCGTCTTCGGCGGCCCGGCGCGCCGCAACTACCACGGCATCCCCGCGGTGCAGCCCGGCACCACCCCGGAGGGCTGCGGGCTCAAGGACGGCCGCATCAACATCACGATCCGCGAGGTCGACCCGCACTGACCGCAAGCCCATCCGCCGAGACCGAATCCATGCGGCGTACCTGACCGCAAGGCCGTACTTCGAGTAGTAGTGCATCATCCTTCCCTGACAATCAGCGGAGGGCGCCGCGGCGTGCTAGGTTTCCTACCAAGGGCTCGACCAAGTTGATTGTTTTTGGGCACCTGGCACTACAACGACGCAGGTCATCAAGT
# Right flank :  CATCGTCGTTGCTTCTTGTGTATGCACAGAAGCGTCATGGTGATGAACACGGCGATCGGAGTCAGCGCATGCCACCACCCGGGTCGTTTCCCTCTGGCTCGATCGGGTCGCGCGCAGCGAGCCAGTCGTCCCAGTCCAGGCTGTCGAGTGGGTCCGCCGGCTCAAGGTCAGGATCATCGTCGGGGAAGGTGCGCGTCACCGACCGGGTGGTGGTACGGGTCTCGAAGCGGACGGTGACCCGGCCGTGGCCCGAGCCCTGCACCCAGCCGTGGCCGTGATCGGGGTGGGACACGTCCTGGGTGTTGAGCCAGCGCGGGCCGTTGCTCGCGGCGGTGTCCGGGGCGTGCTGCTGCGGTGGCGCGACGGGGGCGGCCTCGTCGCCGGTGACGAGCGGTCCGCTCACCCCGACTTCGAGGTCGTCGGGCTCCTCCTCCGGGGTGTGGAGGTGGCTCGTGACCGCGAGGTCGAGGTCCGGGAAGAGGCTGTCCTGCCGGGCCTCC

# Questionable array : NO	 Score: 5.70
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCCTCCCCGCGCCAGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [3,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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