Array 1 16146-14394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQN010000017.1 Bacillus smithii isolate MGYG-HGUT-01390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16145 36 100.0 30 .................................... TTATTCTTGAGTGCTTCATCCTCCATCACG 16079 36 100.0 29 .................................... CTTTAATCAAAGCACTCGTGACAGTGGTG 16014 36 100.0 30 .................................... CACTGGGTCCGCATTGCTTCAATATTCGCT 15948 36 100.0 30 .................................... GAGGCATCAGGAAAAAAATACTCTGCACAA 15882 36 100.0 30 .................................... CAAACTCAAGAACAATTCCTTATTATCATC 15816 36 100.0 31 .................................... TTTTTATAAAGTGTATTCATACTACACTTTG 15749 36 100.0 30 .................................... AATCGATCAAAAAACTCTTTATCACTCGTT 15683 36 100.0 30 .................................... TCAGTCTGTAAGGATTGCAACTCAGCTTTT 15617 36 100.0 30 .................................... AAGCCAAGCGCCGCATATTGTTCCTGGCAT 15551 36 100.0 30 .................................... CGGCGTTCCAGGCATTAACCGGACAACAAG 15485 36 100.0 30 .................................... AGCGAATTTGGTGCAACGGTTCAAAAGAAA 15419 36 100.0 30 .................................... ATGTGATCGTCTTCTTATATCGCGAAAAAT 15353 36 100.0 30 .................................... TTGTTTTTTAGCGATTCATCTTCCATTACT 15287 36 100.0 30 .................................... CCATAACCCTGGATCTGTCGAATATTGCGT 15221 36 100.0 30 .................................... AAACTTCCTCGCACGAAGTTTCTTGTAACT 15155 36 100.0 30 .................................... TTACGTCGAATTACTGAATAAATTAAAAGA 15089 36 100.0 30 .................................... AAAGCGAGTAGAATGCTTGTTTGATTTCTT 15023 36 100.0 30 .................................... GTGCCCATTTACATACCTTGCAGGTATCAC 14957 36 100.0 30 .................................... TTTGTTGCGGAAATGTTTTTACATCGTTGC 14891 36 100.0 30 .................................... CGAATTAAAGACAAAAAAAACTGCAATTTC 14825 36 100.0 30 .................................... TGAAGCGTTTGAATTCATTCGGGAAGTGCG 14759 36 100.0 30 .................................... AAGCTGTCGTTAAACATATTGAAGTCGACG 14693 36 100.0 30 .................................... TGTACGACGAACTTGTCGATAATCCAGACG 14627 36 100.0 30 .................................... AAACTGACGGTAAACAAGGCGAAAGCACGG 14561 36 100.0 30 .................................... ACCGAATTATCTACTGTTTTTCCATAATTT 14495 36 100.0 30 .................................... CCTTTGTAAGACGGAACATGCTGCGTTTTT 14429 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTCATAGTTCCCCTAAGATTATTGCTGTGATATGAT # Left flank : AACGATCACAAACAGATCATCGTAAACGGAAAAACGGTCAATATTATTGGGATTGATGATTTCTGTACCGGACGCAGCAATCTGGTCTCTTCTTATACAAACTTGCCTGACGGAATAAACCTGGTGTTAACTCATGACCCCAATATTGTCCTTCATATGAAAAAATTCCATTTTGACTATTTATTGGCTGGCCATTTCCATGGCGGACAAATCTGCTATCCTAAAGCCTATCACCTATTGAAAATGGGGAAATTGGCCAGGATGAACATGATAAAAGGCTTACACCTATATGAAGGAAAACCTTTTTATATCAATGAAGGACTTGGTCAAACAGGAGTGAATCTCCGGATTGGAAGCAGGCCGGAAATTACATTGCATCGATTCTCCCTTTCATCCGTAAAAACCGAGACTTTACCTGCCATATAAGCCGGACTGTTAACATAAGGTTAAGATTATTGCTGTGATATGATATAGTAAATCGTTTATTTCTCTGTCAAAAA # Right flank : ACGTGATCGAAAAAGCCTGTAATCTCAAGGACTACAGGCTTTTTTCATTCGAAAAAAATAAGGAGTAAAGGTCAATAATTGGGTAAATGTATTTCTTTTTTTAAAAAAGTGTAAGCTGTGTTGAAGCCAATACTTTTTCTTTTTGAGTAGGTTCTCCTAATAGTAATTGCATTTTTGCATATTGTTTTTCTGTTATCATCATTGCCCGTATAGATCCTTGATGAGGTAGGTTTCTTTTCAATCTTGCCAAGTGTTTGTCGGCTGCTTCATGTCCGTTGCAAATGCGGCTGTACACGGAATACTGTAACATGTCGTATCCTTCATTTAACAAAAATGTACGAAAGCGTCTATATTCACGCTTCTCCCTATTCGTAATAACTGGTAAATCAAAAAACACGAGCAATCTCATGTATTTACTCATACACGTGTAATTGAATAGGGAGAAGTTCAGGAAGTTTTAAAAATGAAGGATTTTGACTTTTACTGGCCGTGACAAAGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTAAGATTATTGCTGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 201300-204945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQN010000003.1 Bacillus smithii isolate MGYG-HGUT-01390, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 201300 29 100.0 37 ............................. GCACCCCCAAAGCTTCACCTTCACCCAATCCCCTACT 201366 29 100.0 39 ............................. TTCTGTATACCGTGATAATTGTTTTAAACTTTCAATTAC 201434 29 100.0 38 ............................. TTTAACGTCCTAGTCACGCCATTAGGACGGACCTTAAA 201501 29 100.0 39 ............................. CAGCGAAGGTCAAAGTTAGAAATTTAGGAGATTCCCCCC 201569 29 100.0 36 ............................. TTCTTTTGCTTGCAGATCTGTTGCCAATAGTAGAAC 201634 29 100.0 36 ............................. AGTTTTGCGACTTCCAAGAATTAAAGTGTAAAGACC 201699 29 100.0 36 ............................. GTAGGCACATTCCCAATCATCATGAATTAGCCCATC 201764 29 100.0 38 ............................. TTTTTCTTCGCTTTTTCTTTATCTTCAATCGCCTGTTC 201831 29 100.0 36 ............................. AAATTCAAGAATTGGAATCAAAAATACACTATGCGA 201896 29 100.0 36 ............................. TAGCTTTTGTGCGATCTGATGCATATCTATTTCATG 201961 29 100.0 37 ............................. ACAGATGTGGAGCAAACATCGGATGAAATTGAAATCA 202027 29 100.0 37 ............................. AAAAGCGTAGCCGTAACCGTCGTTGTGCATCTTTATT 202093 29 100.0 36 ............................. AATTTCATCATAGACTTGATTCACAAAATGTGTATG 202158 29 100.0 38 ............................. TCATCAGGATTAACCACAACACCGACCTCGGTACCATC 202225 29 100.0 36 ............................. CGCAGTTGCGAACGAAAATGGGTACGTGAAACTCAT 202290 29 100.0 35 ............................. GTGCGAAAATTCTACTACGTTTTTGACGCAAATGA 202354 29 100.0 37 ............................. CGCCAAATAAATCCCGTATAGTCTGTTCGTTAACTTG 202420 29 100.0 37 ............................. CACCGATAGCAGCCCCGATAAGACCTCCGACTAGAAA 202486 29 100.0 35 ............................. GTATCGGTACCAGTGCCAGTATCAGTCCCAGTCGT 202550 29 100.0 34 ............................. GCGAGAAAAACTTTATCCATTCCTTCCTTTTTTG 202613 29 100.0 38 ............................. TCATAGTACAGGATGAAAGGATGCTTGATAGGCAAATT 202680 29 100.0 38 ............................. GTTTGTCCTAGCCGGAAATACCAAAAATTATATTTTCC 202747 29 100.0 39 ............................. GCTTGTCCGGCGCTTTCTGGAGTTGTGAAGTTATTATCC 202815 29 100.0 40 ............................. TGTGACGGCCATCTTTACGATCGTCACGGCAATCATCGCA 202884 29 100.0 35 ............................. GGGTACGATCTACAGAAAATTGATTTTATATTTTG 202948 29 100.0 36 ............................. TGCTACTTGCACTTGCTTACCAGTAAACCATTCCAA 203013 29 100.0 38 ............................. CAAGCGGAGAGTAGAACGGATATTTGAAGAATATAGCA 203080 29 100.0 36 ............................. TGATTGAATTTCATCCTTACAGCAAGGCAGACCAAC 203145 29 100.0 35 ............................. TGATGAAGAAGTCAGAACGAATCACAGTTTTCAGG 203209 29 100.0 38 ............................. GTTAGAAGAAGGCTACAAATTGCATGAAATCGATGAAA 203276 29 100.0 37 ............................. AAAATTTGCCAGACAAAATTGCAAACGGAATTAAAAA 203342 29 100.0 38 ............................. ACGCTCGCTGGAAATCGGCGCAAAGCGTCTAACGTAAC 203409 29 100.0 35 ............................. CGTTACTAATCCAGTAGGTTTGATAGTCACTACTG 203473 29 100.0 36 ............................. ATGATTGCAAAAGGCTTGGCGGCGATGTGATTCCTA 203538 29 100.0 37 ............................. GTTTTTCTTTGGGTTTTACTCGTTGTATGTGAACGAT 203604 29 100.0 38 ............................. TCGTCGCTCCCGCCAAATACAAAGGGTGCAATGCAATG 203671 29 100.0 37 ............................. TGAACTTGCCAAAAAAGAACGTGAACGGATCGACTTT 203737 29 100.0 36 ............................. GTAGGATGATAGAAGAATCCTTTGTAATGCGGCTAA 203802 29 100.0 36 ............................. ATTGAGACGATTATCAAACTATTAGAAGTTTATCTA 203867 29 100.0 35 ............................. GAATTTCACTGCCCTATCCAGCGAAACACCTTCTG 203931 29 100.0 37 ............................. CGTTTATGCAAGGTTTTATAAGGTATTCCTTTTTCTT 203997 29 100.0 36 ............................. GTTTGATAATTGTGTCCGCTTTTGTCCCTTTTTTGA 204062 29 100.0 37 ............................. CGTTTATGCAAGGTTTTATAAGGTATTCCTTTTTCTT 204128 29 100.0 36 ............................. GTTTGATAATTGTGTCCGCTTTTGTCCCTTTTTTGA 204193 29 100.0 39 ............................. TTATGCTGGACGTTGAGCACTTAAAACTGCTAACGCTTC 204261 29 100.0 40 ............................. TCACCGTTTTCGTCAATCACAATGTCACCATCAACTATTA 204330 29 100.0 37 ............................. AAATGACGCCATTAAAGAAGCGGACGATGCTTTTTCC 204396 29 100.0 35 ............................. AATGATAGCGAACGTAATTATTTGCTTTTTCTGGT 204460 29 100.0 40 ............................. TTTTCTGTTGCATTGATGACATTTAAGCCATGACCAATTG 204529 29 100.0 35 ............................. CCTATCATTTCAGCAAACTCTTTGATGCCAACAAG 204593 29 100.0 36 ............................. TCAACAGGACCATTGATCCCCGCTACTCGTCCATTT 204658 29 100.0 35 ............................. GTTTGCATTTGTAGCGGCATTATTAGCATTTGTTA 204722 29 100.0 35 ............................. ACTTTTGTTCCAATGTTAAGTAGAGTGTCACCAAC 204786 29 100.0 37 ............................. GCTAATACCCATTTCCACGATACGAGCTTCTAAAACT 204852 29 100.0 36 ............................. GGTGGAAAGAAAAGCCGTTTGTTCTTCCTCCGTTCC 204917 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 56 29 100.0 37 CTTTATATCCCACTACGTTCAGATAAAAC # Left flank : TAGAAAAAAGCTGGCATTACATCTGTTTATTTGTCGATCTCTATAATCGAGAAATTATTGACCATAGTGCAAGTCCAAACAAAGTTGCCCAGCTAGTTTATCAAGCATTATCGACAGTGAAAGCAGATTTGCGGCAAATTCAATTATTTCACACAGACAGAGGCAACGAATTCAAGTACAAGATCATTGACGAAGCGCTAGAAACGTTTAACATTAAACGATCGTTAAGAATGAAGGGCTGCCCCTATGACAACGCAGTAGCTGAAGCAACCTTTAAAATCATTAAGACAGAGTTTGTGAAAGGTAAATATTTAGAAAGTTTAGAACAACTGAAACTGGAATTAGATGATTATGTTCATTGGTTTAATCATATTAGAATCCATGGAACGCTAGGGTATTTGAGCCCGATGGAGTATAAAGAGAAACACCTTAAAAAAGTGTCTAGTTTAGTGTTGACATACCATCCTTTGTTTTGAATTAATAAAAGCCAATCATCTTTT # Right flank : CCCTACAATTTGGCACTCAAAAAATCCTTATTTATCAAGGACTAGGGATACTTCAATGTTTCGACGAACATATTAGTTTTGCAGCAAATCGGTAGTTGTGTTTTTCACTAGATCTTTAAAAGCTATCAAAACCCTTAAGCAGCAAGAGATTAGGGTGATTTTTATAAAAACGAGATTCGCTGCAAAACATCAATTGAAGAGATCAGAAACATTTTTTATAAAGTTTTAAAATTCTTTGTGGATCCTACTGTCACTTTTTTTAAATTTAAGACGACTCCACATTTCATGGATTGTATTTATTACATTGAATCGCTTTTATAAAAATAAATCTAAAGGATTCTTCTCTTGACCATAAACCACTTTCTTAATATTTCTTGGGTTATTCACTTGATATAAGTAAATGGAATCTTCCTTTTTGTTAATAATCTGATTCAATTCAAACATACATTTCGTTAATTTTCCAGTTGAAATTTCCCCTTCAAACACAGAATTTTGTGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACTACGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 31394-31233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQN010000028.1 Bacillus smithii isolate MGYG-HGUT-01390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 31393 30 100.0 36 .............................. ATCCAATATTTCAACAAGATTGGATTTCGCCAAAGT 31327 30 100.0 35 .............................. TCAAAGACGGTAAAGAATTTTTTCCTGCAACAGAT 31262 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GTCACGGATTCAGGTGTATTTCTTTATAATCAAGTTTTTTCCTTTACAAAGAGATTGTACTTGTTGTAAATCGACATGGAATAGGGAGTGAAAAGCTGCCTATATGCAAGAATCGAGCGATGTGCCGTTGGTACGTTGTCTCGGTTCTTTATTGTTCTGGGTAGATGCATATTGTATAGAAAATAAACGATCAAAAAAGGCTGATTATACAGTGAGTGAAGCGATTCAGAAGGGGAATTATTCACCTATGTCTGTTCTGATGGATACTCAGTGATTTAAAAATTTCGAATCAACAATAGATGGTTGAATTCATTGAATAGCAACATATATTTTGTCGTCGACCCCTAATAGCGCACAAAACCCAGAGGATCGACGACAGTTTCTTTTACTCTTTCCTTCTTACAACCATCAGCGATTCTCTCTATTGACGGAATTTTCAAAATGGAGTATCCTGAATTGGCCCTGCTTTGAAAATTGTTTATGTATCAATGCATTTTGGA # Right flank : CAAAGTATCATTAAGCCCCTAATGAACTCGGGCACTCTATAAAGTTGTTTTTGTATTTTTATAATCGAAGTGACTAAACGAAGAATGGAACCTTTTAAGATAAAAATAGGCAGTGAATGTTATTAGAAGCTGTTGGTATAAGAGACCTGTAGGAGAGAAATGTACAAATAAAGGAGTAGAAGAAAGTAAGGTTGTTGAGAAGATACAAGAAATGGTTAGGGAGTACAGGGATGAGTTAGTTACGGCTATAAACAAAGGAGAGGGAGGAGATATTGCTAAGGAAAGAGGCAATATTAAAAGAGATTGCACCTACAGAAAGAGCTACAAAAGGAAAAAACAGATTATCGAGAGCTATGGATGCTTATGATAATGGAGATTATACAAGAGGAATATTTGGAAAGGAAAGAGAAATATAAGAATCAGCAAAAAAATATTGAAAGTGAGATAGAGCTGTTAAATAAAGAACAGAAAAAGCTGGATGCTGTTACGGATATGGATAA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //