Array 1 2068281-2067887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059467.1 Aromatoleum bremense strain PbN1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2068280 29 100.0 32 ............................. GGTTTGCCCTCCCCAGCTGACGACGCCCGCGC 2068219 29 100.0 32 ............................. TTTCCGGTCTTCTGCTCCCGGTCGCGGATGGC 2068158 29 100.0 32 ............................. CTTCCCGAGCCGCCGCGATCCCCTGCCCGCTC 2068097 29 100.0 32 ............................. CTTTGCAGTCCCGCGCGATTCGTCCAGGCCCA 2068036 29 100.0 32 ............................. GTCAGCAGACATTCCCCGTTGCATGTGGGCGT 2067975 29 100.0 32 ............................. AACGATGGCTGCGTGGTCGCCCGCTCGGCCGA 2067914 28 93.1 0 ........-...................G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTTTCCCCCGCGTCCGCGGGGATAGGCCC # Left flank : CGACGCTCGCGCCACGTCCACGCCGGGCGACCCCCAGCACCCGGCGCAGCTCTGCCTCGTCGGCCGCCGACAACTCGGCCCACGGCCGGCCGCACTCCTCGGCCGCCTTCACATACTTGGCGACCACGCCTTTGGAAATCGACAGCGCGCGGGCAATGCGCTCATGCGACAGCGCGCAGTCGTATTTGAGCCGTAACAGCTCCCTGATCTTGTGCATGGCAATCCGCTCCGCCGGCATTCCCGTCTCCGCGCAAAGCGCGCGAGGGTAGCCGGCCTGACAAACGACGTTGCCACGCTTGGCCTCACAAACCCGTTCCGATTTGATCGTGACCGACGATTCCGACATCGTGACCGCCCATTCCGACAACTCGCCGAAATCGGTCACGATCAAATCGGAATCCGCGGTCACGACCCGCGGATTCACCGGTCACACTATTTCGGAATCAGCGGTCACGTTGGGTCGGAATCCGCAGTACTGTTCGGCACCGGGATATTGCCAT # Right flank : CCCGGTACCGGTCATCGAGTGTCACCGACCGGCACATTGGAGCCACCTCATGACCGGCACATTGAGGTCAGTCCGTGATCGGCATATTGGGGCTGCGCATGGATGAACGCTCGCGGCTCGAATGGATGCAGGATGGCGACGCCGACTTTCGCTCCGCATGGCCTCACACATGGACTGACCTGCGCAGATCGGCAGGCGTTTCGGTAATTGGCTGAACGCCGAACTGGGGCAACCGCTGCCGCGCGGAGATGTCGAGGGGCGTGAGGCGACGTGATGAGCACATTTCCTGAAAGCCAAGGCCTGCTTGTGCTTCCCCGTCTGCGCACGCAGAACGCCAACGCGATCTCCAGCTCCCTCACGCGCGGCTTCCCCCCGCAAGGCTGCCGGGCAGCAAGGGAATTTCCGCTGCGGACGGCGTTCGAATTGCGCGAGGGATGATGCTTCTTCCGAAGCGTCGGCGGGCCATCAATCTCATCGAAGGGCAGCTTCAAGCGGCCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGTCCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2071080-2076601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059467.1 Aromatoleum bremense strain PbN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2071080 29 100.0 32 ............................. ACCGAGTAATACCCCGTCGAGTGCTCGCGCCC 2071141 29 100.0 32 ............................. AATCCGTCCTTGACTCAGGCACGTGCGACGAC 2071202 29 100.0 32 ............................. GCCGGCTGCGATACGCTCATCTCGGTGAACCA 2071263 29 100.0 32 ............................. AGGTAGATCGGTCCGCGGGCCGGCGCAGTGCC 2071324 29 100.0 32 ............................. GCGATGGTGGGGAGCGCGCGGAGGCGTCGGCG 2071385 29 100.0 32 ............................. GATCGGCGGTTGATCGCCGATGAAGGATTCGA 2071446 29 100.0 32 ............................. TCATCTCGTCGTACGTCCGGGTCGCCGTGCCG 2071507 29 100.0 32 ............................. AAGGCCGGCTTCATCGAAAGCCGCGCCGCGCA 2071568 29 100.0 32 ............................. TCGACCTGATGGTCAATATCGTCGCGGACCTG 2071629 29 100.0 32 ............................. AACGGTCAAATCGATCCGGGCGGCGGCGAAGG 2071690 29 100.0 32 ............................. GCCTGCGGTGCGCTGTACGTCACACGCCGGTC 2071751 29 100.0 32 ............................. ACTGCCCTGCGACCTGGTTGGCCTTGTTGATG 2071812 29 100.0 32 ............................. GAGGAATGGGCGCTGAAAGCCGGCTGCTTTCC 2071873 29 100.0 32 ............................. GCTGCCGGCGATCTCGGCGCGGTAGTTCTCCA 2071934 29 100.0 32 ............................. ACCGCCATCCAGGCACCTCCTTGAGCGATCCA 2071995 29 100.0 32 ............................. GGTTGGGCGGCGAGCCTGACGAGTGCTCGGGC 2072056 29 100.0 32 ............................. GAGGCGCGCGCGCAGACGGCGCTGGATGATGA 2072117 29 100.0 32 ............................. GCGATCTGGCTGCAGCGGGCGTGGGGCGTGGA 2072178 29 100.0 32 ............................. ATCATCGACAACGCTGGCGCCGAAGTCGGCGA 2072239 29 96.6 32 A............................ GTGCGCGGCGGTAACGAATTGCTCCCAGACAG 2072300 29 100.0 32 ............................. TTCATCCACTGTTTTTCAACTTTCTATAGGGG 2072361 29 100.0 32 ............................. GCCAGATCGTCGATGATCATGCCGGGGGCGAA 2072422 29 100.0 32 ............................. TCCCCCAGCCATCTGCCGCCGGGTTTTTCGGG 2072483 29 100.0 32 ............................. TTGATATAGGCCACCGCATTGCCGAGCTTCAG 2072544 29 100.0 32 ............................. GATCGGCAGGCGCTCGCGCTGGCGGGCTAATC 2072605 29 100.0 32 ............................. TGACGGTTGCGCCTGAGATGTGCGCGAAGATC 2072666 29 100.0 32 ............................. GGGAAGGTTGGGAAGTAGCAGTGTTTGTGCGG 2072727 29 100.0 32 ............................. ACCGCCAGCGTGCCGCCGCGCATCATCGACTG 2072788 29 100.0 32 ............................. TCCAGATCCCGACGCAGGTGATCGATCAGCCG 2072849 29 100.0 32 ............................. GCCTTATCGCCGACGCATGATCTTGGCCACGT 2072910 29 100.0 32 ............................. CTCGGCGCGGTCGCGCTCTTCCTGCCCGTGGA 2072971 29 100.0 32 ............................. GCCGAGCAGATGGAAGTGGCGCACCTGGTCGA 2073032 29 100.0 32 ............................. ACACGGCGCGTAACGAGCGCGCTTTTGCTCCA 2073093 29 100.0 32 ............................. ACCGCCTGGGCCGTCGGCCGCGGCGAAGAGAT 2073154 29 100.0 32 ............................. ATCAAGCCGGCGCCTTGCCTCGATCTGGCCGA 2073215 29 100.0 32 ............................. CCGTCGCCTATGCCAACGATGCGAACGCCCGC 2073276 29 93.1 33 .........................G..A CGCGGCCTCGCGGGACATTCTTGGGACGCTGCC 2073338 29 100.0 32 ............................. ATCCCGCATGAACCGTTTCACGGCGAGCGCAT 2073399 29 100.0 32 ............................. GAAGAGCAGCGATTGCTCGCGCCGATTCGGCA 2073460 29 100.0 32 ............................. ACGCACGGATATTCCGGGTGACGCAGCATCGG 2073521 29 100.0 32 ............................. CTCGCCCCGCGTGCGCCGGTCACCATCGCGAC 2073582 29 100.0 32 ............................. ACACGGCGCGTAACGAGCGCGCTTTTGCTCCA 2073643 29 100.0 32 ............................. ATTTGGTTTCGGCGTTCATGCTGCTTCCTTGA 2073704 29 100.0 32 ............................. TCTCGCCCGCCAGCTGCCGACGCTGTGGTCAC 2073765 29 100.0 32 ............................. CCGGAGCAGGCCAAGCGGGGGATGCCGGAGCC 2073826 29 100.0 32 ............................. ATCTGCTCCAGGTTGTCCCGCAATCCATCGAG 2073887 29 100.0 32 ............................. AGCCACAGGGCTCAGCGCATCGGCCATGGACT 2073948 29 100.0 32 ............................. GTCGCCCGGCTATGGCCCGGCAGCGAGGGGAT 2074009 29 100.0 32 ............................. CGTACGGCGCCATCATGTTCAATGCCGTGCTT 2074070 29 100.0 32 ............................. AAGGACGAACGGCTCGCCGTGCTCGCGGTCGG 2074131 29 100.0 32 ............................. GCGACGGTCTCGCCGAGCAGCATCAGCTTGAG 2074192 29 100.0 32 ............................. GGGCGATGGTGAGTTCATAGTCGGCGGCCTCC 2074253 29 100.0 32 ............................. CATAAAGCCGCGCCAGTCGCCTCACCTCCAGC 2074314 29 100.0 32 ............................. TCGCCCACCTCGACAAGCACAAAGCGATCGGA 2074375 29 100.0 32 ............................. CGCTCGGAGCCGAGGAGATGCTCGAGCTTGGT 2074436 29 100.0 32 ............................. TGGACGCCGAAATCTTCAAGGACTGCCTGCAG 2074497 29 100.0 32 ............................. TTCGTCGGCAAGCTCGCTGCCGTGCAGCGCGA 2074558 29 100.0 32 ............................. TCGCGGCGAGACGCCGAGCATCTCAGCGAGAC 2074619 29 100.0 32 ............................. AAATGGAAACTGGTATTTCCGCGAACGGTCGC 2074680 29 100.0 33 ............................. CTCGGCCGGAATCAGCTTCCCGCGGCGCTCCGC 2074742 29 100.0 32 ............................. GAAGTACAGACGTCTGGACGGGAGCGGCCGAC 2074803 29 93.1 33 .........................G..A CACTTCTACAACTTTTCGCATATGGACAGCCTC 2074865 29 100.0 32 ............................. GGGGGATTTGTCGTTTGGCGGTGGCACGTATC 2074926 29 100.0 32 ............................. AGGCGGCGCACACTCGCCGTTTTCATTGATTA 2074987 29 96.6 32 C............................ CGCGGTATCGGTCGCGCCGGCGCCGCCGCCCA 2075048 29 100.0 32 ............................. GGCATGACCCGCATGGAAACACGAATCCTGTC 2075109 29 100.0 32 ............................. GACGGCGTCGATCTCTGCGTGCGTCTTGGAGA 2075170 29 100.0 32 ............................. GATTGCAGGAATTTGCCCGCGAGCATGGGCCG 2075231 29 100.0 32 ............................. TTGAAACCTGCAAAGAGCATGGAATTGCGATG 2075292 29 100.0 32 ............................. ACATCCGCCTGGGCGCCGAGGAGCGCGGCGGC 2075353 29 100.0 32 ............................. CACGGGTGATCGCCTGCAGTGCCGGGCTTCCA 2075414 29 100.0 32 ............................. GTCGGTGAATTCCTGCCAGTCGGGAATATTGA 2075475 29 100.0 32 ............................. TTCCGTTGTCGTGGTGCTACTCGACCCGTCCG 2075536 29 100.0 32 ............................. ACCGGAAAGGGGGTGCCGGAGTGCATCGCGAA 2075597 29 100.0 32 ............................. TCGACCAGACCGGACCGGTACAGCTCCGGCCA 2075658 29 100.0 32 ............................. AATGTCGCCGGCTAGTCCAGATTAAACGAACG 2075719 29 100.0 32 ............................. GGATCGAGTGCGGTTTGAATGATGCCGTGCTC 2075780 29 100.0 32 ............................. GGCGCCGCGCACGCAGCGCAGCGCGACATCCA 2075841 29 100.0 32 ............................. TTAGGGTTTGGGAGGCGCAGCGGGTGCCGCGC 2075902 29 100.0 32 ............................. GTGGTGGAGGATTGACAGACGGTGACCCGCCA 2075963 29 96.6 32 C............................ GACACGAGGCCGACGAAGCCGGACACGATGAT 2076024 29 100.0 32 ............................. CATACAACCGCTTCATGTCGTACTCCGCGCCC 2076085 29 100.0 32 ............................. ATTCCAACCCGCAGAATCTGCACCGCGATTTT 2076146 29 100.0 32 ............................. TTCGAGGATGCTTTCCGGCGTAGCCTTTTCCG 2076207 29 100.0 32 ............................. CGCTCACCGCTTTCTTTGCCACGAAAATTCCG 2076268 29 100.0 32 ............................. CGTTAACAAACCTACGGGGTGACGAAATGAAA 2076329 29 100.0 32 ............................. TGCACCCGACCACGTACTGCCAAACGCATACG 2076390 29 100.0 32 ............................. CAACAGCGTCAGCCTGATAGCCGGAAATCGTG 2076451 29 100.0 32 ............................. GGTCGGCCCGGGACGTGTCCAGAAGGTGAAAC 2076512 29 100.0 32 ............................. GAAGTCGGGTTCGTCACGACGGACGACGGCCT 2076573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 91 29 99.7 32 GGGCCTATCCCCGCGGACGCGGGGGAAAC # Left flank : CTTCAGCCGACGCCTGATGCAGCTCGCGCGCATGGATCTCATCGTCATCGACGATTGGGGCCTGGCCGCGCCGTCGGCGCAGGAGCGAAGCGACCTGCTGGAGCTGCTCGACGACCGGGTCGGCACGCGTTCGACCGTGATCACCAGCCAGCTGCCGATCGAGCACTGGCACACCTACCTGGGCGACCCGACCTTCGCCGATGCGATCCTCGATCGCGTCGTGCACGCCGCGCACAAGCTCGCCCTCAAGGGCGAGTCGATGAGAAGAAAGGAAAAGGCATGAGGCCGTGCGCGCGAGACGCCTTACCCACAGGCGCCCGCCCGCCAGCGCATGAGGCGCACTGGCGGCCGCCTGTGGATAAGCCTGCGCCGTGCCTCGAATCGAGCGTCATCGTGACCGACGCGGTTAGAATCTGAACACCACGCTTCGCGCGCAGACCCCACCGGTCACGTTCGTCGGTGCAGGCGGTCACGTTCGTCGGAATGCGCACAGTACAAGC # Right flank : CTCTTGTGGATAGTATTTTGATCCAAAAGGAGAAAACGGAAAACTCATTCAAGTTTTTAAAGTGCGGATTACAACATCTTTTTCACCAACCACGTGCCGTCGACTTCTATGAGTTGGCGAGGCGGTTCGCCCAAGGATTCTATTCCGACGCCGCCCGTTTCATTGACGTCGCGCCACACCATCGTGATGCTCCCGCGTGGCTCTTCACTGTGCCAACTCGACAACACGTCCCACGTTCTGCTGCGAACACCCGGGTTCATGCGAGGCGACACATACACGGCCGGTGCCACTTCGAGCATGATCGACGCCAAGAAGCCGCGATAGCGGTCGGCGACGTCACGAGTCACGATCATCACCAACGCCATCGATTTCCTCAGTGCGTAAGACTTGTTTGATCTTGTCGATCATGGCCGGAATGACGGACTGCTTGCGAAACACCGTTGACGCCTCTCGCCTTACCAAGCGATCTATGCTGTCCGTGTGTCCAGCCAACGCCTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCTATCCCCGCGGACGCGGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //