Array 1 1-2008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGV010000001.1 Clostridium perfringens strain 3C41 NODE_1_length_1106228_cov_122.749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 67 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 133 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 199 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 265 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 331 36 100.0 29 .................................... ACATAGAGTTTACGTATGTAGTAGATTCT 396 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 462 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 527 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 593 36 100.0 30 .................................... GATGAAGATTCTATTGATGAAATCTTGCAA 659 36 100.0 30 .................................... CTATTATGAAAAGACTAGTATTAGAAGTAA 725 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 791 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 856 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 922 36 100.0 30 .................................... AGCTGAAATGCTTAAACCTATTACAGACGC 988 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 1053 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 1119 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 1185 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 1251 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 1317 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 1381 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 1447 36 100.0 29 .................................... TTAAATCGTTGTTTAAGTATCTCATAGCC 1512 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 1578 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 1644 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 1710 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 1776 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 1841 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 1907 36 100.0 30 .................................... GATGGGTGAATTAGAAGCAACTAGAGCTAA 1973 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : | # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 274545-275567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGV010000003.1 Clostridium perfringens strain 3C41 NODE_3_length_275567_cov_90.9692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 274545 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [274547,274557] 274613 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 274679 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 274745 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 274811 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 274877 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 274943 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 275009 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 275075 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 275140 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 275206 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 275272 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 275338 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 275404 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 275469 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 275535 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //