Array 1 1178628-1181601 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIGS01000002.1 Chryseobacterium indologenes strain NCTC10796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1178628 47 83.0 30 A.CT.AT..CAT................................... CATTTTAATGCTTACAGAATCGTCTGATAA T [1178637] 1178706 47 100.0 30 ............................................... AGGTAATCAAATGTATAGTTGAAGAAGGGG 1178783 47 100.0 30 ............................................... ATTTCTAAATCTCTCATTATACCGTCGACC 1178860 47 100.0 30 ............................................... TTTGGAAGTTGGTAAATATCACAGATTTCC 1178937 47 100.0 30 ............................................... AAACCTATTTTCTGGAAAATAGAAACTACT 1179014 47 100.0 30 ............................................... AAACCTATTTTCTGGAAAATAGAAACTACT 1179091 47 100.0 30 ............................................... ACGCATCTCTCCTATCTGCTTTGCTTTTCT 1179168 47 100.0 30 ............................................... ACCATCGCCTGCGCCTGTTGGATAATATGG 1179245 47 100.0 30 ............................................... CATAACATTATCGATTTCATTTTCTAATGC 1179322 47 100.0 30 ............................................... TAGGTTCACGCGTGCTAATTCAGCCGCAAC 1179399 47 100.0 30 ............................................... ACGAGATCGGATTCGATCTGGATTGACTTC 1179476 47 100.0 30 ............................................... ATTAGTCATCATTTCTACCTTAATCGCAAC 1179553 47 100.0 30 ............................................... AATATTGCTTCCAATTAGATGGCATTGTAT 1179630 47 100.0 30 ............................................... TATCGTTATCTAGTCGAATTAAGCGTTTTT 1179707 47 100.0 30 ............................................... ATTGTTTTTTCAGCCTCAATTCTTTTTGTT 1179784 47 100.0 30 ............................................... GTGACTACAGCATTTAAATACCACATCACT 1179861 47 100.0 30 ............................................... AGACACTTCCAAGGCATTAGCTATCTCTTG 1179938 47 100.0 30 ............................................... AATTACACCTTGGGGACATTGGGCTGTTTC 1180015 47 100.0 30 ............................................... TTACCTGTGACGTATCTGATATAATTTCAT 1180092 47 100.0 30 ............................................... AAAAGGTATTGCAGTTTGGTTAATCAGCAT 1180169 47 100.0 30 ............................................... TAAAGACAACATAAGGAGTTGCTACCTTCA 1180246 47 100.0 30 ............................................... GAATATCCATTTTGAGCAAACAGCACTCCA 1180323 47 100.0 30 ............................................... AAATTCGATATTTTGTCCCAACGTGGACTT 1180400 47 100.0 30 ............................................... TCATCCAGACCGGAACTCATGAGCTTTTAG 1180477 47 100.0 30 ............................................... GTTCTTCGTTTCGCCTTCCATGCTTCGAAC 1180554 47 100.0 30 ............................................... ACGCTGTAGACAGATTTGTTTCGCCGCATG 1180631 47 100.0 30 ............................................... GTAGCTTTTATGAAGTAGCACCCGGCGTAC 1180708 47 100.0 30 ............................................... CAGGCAAAATTTCCCTTAAAGCGTTGGGGT 1180785 47 100.0 30 ............................................... CGAACTGTGATTGCTTACCTTCGTTGTTCA 1180862 47 100.0 30 ............................................... CGTAATAAACGATACAACTCAATTCTATAT 1180939 47 100.0 30 ............................................... CACGAACGCCGTACGTTAGGGGGCAGCGCG 1181016 47 100.0 30 ............................................... ACTCGCCAGTACTTTTAATGCTCTCCCACT 1181093 47 100.0 30 ............................................... CTGTGACTTGCTGGCCGCCTTTAGGAAATA 1181170 47 100.0 30 ............................................... GGGGCTTTTGATTTCAAAACATATAATGGT 1181247 47 100.0 30 ............................................... GATGGGCTAGATGAATATATATATTATACG 1181324 47 100.0 30 ............................................... TTGCAACTGTATATCATGAGACAGGTGCTA 1181401 47 100.0 30 ............................................... TGCCCGCAGCAATGAAGCTAAGGAACTCGG 1181478 47 100.0 30 ............................................... TTGTTCCGGTTCTTCAGTATTGAAAAGCCA 1181555 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 99.6 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : AAGGTGTGTTTCAAGGTCAGCCGGTTTTTTGTCTTTTTCAGTTACGGAAGCCGGATCAACTTTAATAGAAGTCATATCTATAGTAAAGCTTCCTGCTACAAGCTGCCCACCTTCAATATTCAGGTCGCCTGATTTTATGTTTAAGGTACCCCAACGAGGTGCAAAACCTCCTTTGTGGAAAGCTTTCCAGTTTACTACAGAAGTTACCGTATCTACTGCTAATGCTTCTCCTTTTCCTTCAGCAACAGACTGTTCAGTAGCTACTGCTGTATCGGTTGTTTTTTCTTTATTGTTACATGATACTGCCAGTAATCCTACTGCTACCAATGCAATTACGCTAATTTTTTTCATATTGAACTGTTTAAATAAGTTTGTTGAAATCTTTGTTGTTTTCGGTTACAAAAATAGAAAAACATTATTATTGACATCTTATCATATATCAAGAAATGCGATAAGACAGTTTATTTGAACTTATGAATAAAAATAATGTGATACTTAGA # Right flank : CCTCAAAAAACAATCCACTGAAAATCAGTAGATTGTTTTTGTTTTTTAGGATTTTAAATTTAGAATAATTCAAGCTGTTGAAAAGTTGGAGGAGGTTCTTCTTTATTTCTGGCAAAAAATATTTCAATATCTCCAAATTGTTTATCCGTAATACACATAATAGCAACTTTTCCAGCTTTTGGAAGCATAAATTTCACTCTTTTAATATGAACCTCAGCATTTTCACGACTTGGACAATGCCTTACATACATTGAAAACTGAAATAACGTAAAACCATCATCAAGCAAAGATTTACGAAACCGGTTCGCATCTTTCATGTTAGCTTTAGTTTCTGTTGGCAAATCGTATAATACTAAAACCCACATAATTCGATAAGCATTAAACCTTTCGGCATTCATATCAATTTAGGATAAGAGATCAATCGTTTTTCACCTGTATAGCATTTATATAGAGACATGGCTGTTGTTTTTACTGCAATCAATAATGGTCTGATTTTATCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //