Array 1 377671-378599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081487.1 Pasteurella multocida strain Pm64 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 377671 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 377731 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 377792 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 377852 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 377912 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 377972 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 378032 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 378092 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 378152 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 378212 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 378272 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 378332 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 378392 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 378452 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 378512 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 378572 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1689732-1686884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081487.1 Pasteurella multocida strain Pm64 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1689731 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 1689671 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 1689611 28 100.0 32 ............................ GGATGGATTGCTTCTAAGTAGCCTTTGCCTTC 1689551 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 1689491 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 1689431 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 1689371 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 1689311 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 1689251 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 1689191 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 1689131 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 1689071 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 1689011 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 1688951 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 1688891 28 100.0 32 ............................ GCTCCAGTCGCTTTTAGTTGCGCTTCGGTGCG 1688831 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 1688771 28 100.0 32 ............................ TCGCCAATATAAGCATTAACATTCACATCAAC 1688711 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1688651 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1688590 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 1688530 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 1688470 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1688410 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1688350 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1688290 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1688230 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1688170 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1688110 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 1688050 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 1687990 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1687930 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1687870 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 1687810 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1687750 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1687690 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1687630 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1687570 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1687510 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1687450 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1687390 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 1687330 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1687270 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1687210 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1687150 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1687090 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1687030 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1686970 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1686910 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //