Array 1 14464-13833 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHGZ01000023.1 Caviibacterium pharyngocola strain 7.3 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 14463 32 100.0 35 ................................ AACGTCAGGCGGAGAAAACGGAAGTGGCTGCCGAG 14396 32 100.0 34 ................................ ATAAATCCGAAGAAAACACCGAATTTTATCAATT 14330 32 100.0 35 ................................ ATCTCTTGTAGGATTGCCACTAGACATATCGAAAG 14263 32 100.0 35 ................................ TGCCCCATCGATGTGTTTGCTATATTCACTGATAG 14196 32 96.9 34 .T.............................. CTCTCACTTAAATCATCGATCAAAGAGGAATATA 14130 32 100.0 35 ................................ AAGAACAACAAATTGCAGCAGAAGCAATGGGATTG 14063 32 100.0 34 ................................ TTTGGGATTATCGGCTTTGATTTGCTCAACGAAA 13997 32 100.0 35 ................................ CCATTTGACAAGATAACCGCCATTCCGATGAGTTA 13930 32 100.0 34 ................................ AGCGTCGGGCGTCAGGGATTAATGCACTTGCCGG 13864 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.7 35 CCAGCTACCTATGCGTAGCTGAGTGTTGAAAC # Left flank : | # Right flank : TAAGTGCAGTCGTTAGTTGTTAAGGGCAAATAACAACCCAAGCAGAGAAAGAAACGGATTGCGCCAAATAAACGCGAGTATGCCGATAAGTGCGTAGCTAAGTAAGCTGTAAAACATCACTTGTACGAAGGTTGCAGCACCGAATAACCAAAATAGTAAGCCGATTTCAAACGGCAATAGCAAAACGGCGTAAACAATGACGGTAATTATATCGTTTGTTCTATTTACCATTATAGGCACCTCCTATGTCAGATAATTTAACTTTATCGCTTAAAATTAAAGCAGATTTAGATAACGCCGTCAAGAATATCAAGAACCAGCTACCTACACGTAGCTGAGTGTTGAAACAAAGGTGAAGAACCGTTCTTGTTCGAGACAGCCGACCAGCTACCTACGCATAGCTGAGTATTGTAACACGGTCAATATCAGTAAGTAATTTTCCTTAGCCGCCAGTTACTTATCGTGATTGTAGGAAATCGTTTTCTAAAATTAAATGTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACCTATGCGTAGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched CCGGCTACCTACGCGTAGCTGAGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18480-18951 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHGZ01000020.1 Caviibacterium pharyngocola strain 7.3 contig_20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18480 37 83.8 36 T.T...........TA........A.........A.. CGAACGTTGTTTAGAACTATTGGAAACTAAACAAAA GA,G [18484,18487] 18556 37 100.0 33 ..................................... TACCTATTGTTTTTCTGTCTATATGGCAGTGTG 18626 37 100.0 34 ..................................... TCAGACTCGCACAACAAGCCAAAAAATCGGGTAT 18697 37 100.0 37 ..................................... TGAACCTACTCGGCAAAGCTTAAACATGCCAATAGGA 18771 37 100.0 36 ..................................... GAAAAATTATGCAAGAACTTCAAGAATATGCAAATG 18844 37 100.0 34 ..................................... GTTTTCTGATTTTGCTACTTCGTTTTTCTCGGCA 18915 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 97.7 35 GTCTTAATCCCTTTCGGACAGGGCGGGGTCTTTCGAC # Left flank : ATCTTTCCGTCTATGACGTAATCGCTCTCGGCTTGCCTCGCCCACTTTCTGCCAGCCAAGAAGCGGAAAAAGTGCGGTCGGTTTCTGAAAAATTTTCCATTACCCATTTATTAAATCAGCCTTATCAGCAGCTTTCAGGCGGCGAAAAAACACGCGTACAACTTGCTCGTTGCTGCATAAAAGCCAGCCCATTGCTGCTTGCTGACGAACCCATCGCCGCCCTTGATCCTTACTACCAAATCGACATTATGGAACAACTCAAAGCCCTAACGCCTGAGCACACTTGCGTAGTGGTGATCCATCATCTTTCTCTAGCTTATCGTTTTTGCGATGAGGTGATTTTGCTCCACCACGGCAAAATCCTCGCCAGCGGTAAAACGGCACAAGTGTTAACTAAGGAGAATTTGGCGAAAGGGTTTAACGTGAATGTAACGATTGATAAAGAACGAAAAGAGATTCTTAATATTGAAAAAAATGCCGCGAATTAGCGGCATTTTTGT # Right flank : CTGCGGAGGGCGGAATTTTCTTTTTCTCTCAATAAGTTAGAGAGAGGCTTCCCAACTTTTTCAATATACTTCAGAGTGAGGTATTGATTTGGTGAAAATCTAATCAAATTCATTATTCCACAGCCTAAAAACCACGTTATTATAACAATTAAAAGCAAGAGAGGCGAAGGGTTATTCTTCCGAATTTAGCGGCAATCCCGTCCAGATAATCCCTTCCGGTAATACCGGCTTGCCGATTTGCCATTGTTTGGCGTTTGAAGGCAAGGGATAAACCCGTAAATCATCTTGTTTTTTGTGAATTAAGGTCAAAACATCATTTAAACAGCCTTGAAGCTCTTTTAACTTTCCTTCAAATAAAAAGATGCTGTATTGAATCGGCGTGGCATATTTCAACATCTGCTTATGCACTTTTTGCAGCCGTTTTGCATCAGAAATATCATAGCCAATAAGATATTGCATATCGCCTCCTAGAAATAAAATTCATAATTAGCCAGCATTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTTCGGACAGGGCGGGGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 27449-31597 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHGZ01000026.1 Caviibacterium pharyngocola strain 7.3 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 27449 32 100.0 35 ................................ CTTGCAAGCGGATATTGATTCATCCGTAGGCGACG 27516 32 100.0 33 ................................ TTCTTGACTTTTGCAGTAGCCAAAGTAACCATC 27581 32 100.0 33 ................................ TATTATGTTTTAATGTTATCTAAAACTTAATAA 27646 32 100.0 33 ................................ TGGCTTTTGCTTTATTGGCGTGGTGGATTTTAG 27711 32 100.0 34 ................................ ATCGGCTGGTGCAAATCACAAAATCCCTATATCG 27777 32 100.0 33 ................................ CGTTAACTGGTGAGGATGACGATCCGATAGAAA 27842 32 100.0 35 ................................ AACGTCAGGCGGAGAAAACGGAAGTTGCTACCGAT 27909 32 100.0 34 ................................ CCGACCAGTCTTACGTTTCGTTGGCGTTTGCGAA 27975 32 100.0 35 ................................ GGGAAATCCTAGGAAATTCTCTTGTAGAACTGAAC 28042 32 100.0 35 ................................ AAATTAAAGATCACAAAATAGTAACGACGTCTGAA 28109 32 100.0 34 ................................ ATAATTTTATCTCCTGCCGCTAGTTAATCATTTA 28175 32 100.0 34 ................................ TTGTTGAAAGTGCGAATATCATAGAGCGGTGGAA 28241 32 100.0 35 ................................ TTGTTGTTTGGCATAATCTAAGATCTGTTGCTTAA 28308 32 100.0 35 ................................ GAGGTTATTGCCTCGTTGCATATCGGCGGATTTGT 28375 32 100.0 34 ................................ GTGAATATCGGTTTTAGCCATTTGGGTTTCTCCT 28441 32 100.0 35 ................................ TGAGCTTAGCTTGTGTTTTTTGCTGAACAATATGA 28508 32 100.0 33 ................................ ACGGTCAGTTTTACATTGACCGAATTTGTTACC 28573 32 100.0 34 ................................ TCTGAAATATTTAGCAATGTATATAGATTTGCAA 28639 32 100.0 36 ................................ TTGGGGCAAAAAGGGGAAGAAAGCCAAACGGCTTAT 28707 32 100.0 33 ................................ AAAAGCGTCGTTAATAATTTGCTGTTTAATTTC 28772 32 100.0 34 ................................ GACAAAAAAGACTGGAAAACATCATAAACCGGTA 28838 32 100.0 35 ................................ TCGCTCAATATTTATTTTGATTGCCTCAAGCATTG 28905 32 100.0 34 ................................ AACGTCAGGCGGAGAAAACGGAAGTTGCTACCGA 28971 32 100.0 34 ................................ AATTTCGGCAAATGCCTCAGGGTGAAAGAGTAGT 29037 32 100.0 35 ................................ TTTTTAAGGTGACGGGTTTTGTCATATCTAAACGA 29104 32 100.0 34 ................................ TTTTGGATGTGGTGGCGAAATATATGGCGAAATC 29170 32 100.0 34 ................................ ATTTTCATAGTGCATTAACGAACATAGCGCAGAA 29236 32 100.0 35 ................................ GATAGTTCCTCTACTCGCTCCCCGGCTGCTTTGTT 29303 32 100.0 34 ................................ TGCGTGCTACTCACCGTCTTCACAAACGGCTTAC 29369 32 100.0 35 ................................ TTCAAGGGCAAAAGAAAAGCCAAACGAGCGAAGCG 29436 32 100.0 33 ................................ TTCGAAAACTCGAAACTATCTGGCTTGCAAGGT 29501 32 100.0 34 ................................ TCCGTATTTAAGTCAAGCAAGCCCACACGCCCCG 29567 32 100.0 36 ................................ TAGCTCTAAGATGAAATTTGTGTTTTGGTTACTCAA 29635 32 100.0 35 ................................ TCTTTCACTAGCTAAAAAAACGCCAAGCGAGCGAA 29702 32 100.0 34 ................................ CAATCCATATTCGCGGTAATGCCCACCGGCAAAT 29768 32 100.0 35 ................................ CCTGACTTTATATGTAATGTACCGACGGGTCGCAG 29835 32 100.0 33 ................................ ATTCAGTTAGTGTTGAATTTTCAACACTCTCAA 29900 32 100.0 35 ................................ CTCGTGCTTTCCGTCCGCAGTGCTTTTGCCCGTGC 29967 32 100.0 33 ................................ TCGCGGGCAAGCCTATCGCACGGGACGTTGGAT 30032 32 100.0 34 ................................ TCCAAAAAGTCTGACTAACCATTTGTCTGCATCT 30098 32 100.0 35 ................................ CCATTTGACAAGATAACCGCCATTCCGATGAGTTA 30165 32 100.0 34 ................................ AGCGTCGGGCGTCAGGGATTAATGCACTTGCCGG 30231 32 100.0 36 ................................ AGTCTATTGTTGTAAGGAAGAATAAGCGCGGTGCTA 30299 32 100.0 35 ................................ TTTTACAAGGATAAAAAAATGAGAAAAGCAATTAA 30366 32 100.0 34 ................................ CGCAAATGGGTCTTAAACGTGCTTGAGAAAGAAG 30432 32 100.0 34 ................................ ATTGATGAAAAAATCTGTGAATATTGGGATATTC 30498 32 100.0 37 ................................ TGCTGAGATTAAGCAATGGCATAAAACGGCAGATGAA 30567 32 100.0 34 ................................ AAATTGGGCGGTGAGATGTTGGATAAGCGGTTGG 30633 32 100.0 34 ................................ AATGTGTCGAATTTACGCGCTCAATCCTGCCGGG 30699 32 100.0 35 ................................ AAGGAAAGAATGTAGATCACGAGCGTTAGCAAGTT 30766 32 100.0 36 ................................ ATTGCACTGCAAATCGTCATAGCATTGTCGCTAACA 30834 32 100.0 34 ................................ GATTTTGGGTTTGTCTATTTCGGATTGTTTAGAT 30900 32 100.0 34 ................................ ATAACGCTTTAAAATACTGAGTTTGTTGTGATCT 30966 32 100.0 34 ................................ ACTGTAATTGGGTCTTTGCCGTATAGAATAACAG 31032 32 100.0 34 ................................ ATTTGTAGGCGTTTAACGAATAATGTGTTATTAA 31098 32 100.0 35 ................................ TCGTCCTACCCACCAATTCGTGTTGTCATCGCTGA 31165 32 100.0 34 ................................ CTTATCATGGAAATGCTTTGCGACCTTCCGTGAT 31231 32 100.0 36 ................................ ATTTACAAAACTAACGAGTTCGTTTACTCCGGTTAA 31299 32 100.0 36 ................................ GGTAATATCTAATGCGACTGCGACACTACCGTCTTG 31367 32 100.0 34 ................................ TACATCAATAACGTCTACCCGAATCGAGATAACC 31433 32 100.0 34 ................................ ATAAATCCGAAGAAAACACCGAATTTTATCAATT 31499 32 100.0 35 ................................ ATCTCTTGTAGGATTGCCACTAGACATATCGAAAG 31566 31 93.8 0 ........................-..C.... | C [31596] ========== ====== ====== ====== ================================ ===================================== ================== 63 32 99.9 34 CCAGCTACCTATGCGTAGCTGAGTGTTGAAAC # Left flank : CAATGGCTAAGGAAAAACGATGTTAATGCTAATTACTTACGATATTTCATTTGATGACCCGGAAGGTGCGGCACGCCTGCGCCGTATCGCCAAACATTGCTTGGATTACGGCGTGCGTGCACAATATTCAGTGTTTGAATGTGATGTAACGCCCGATCAGTGGGTAGTGTTGAAAGATAAATTATTGAAAACCTACAACCCCGACACCGACAGCCTGCGTTTTTATCACCTAGGCAGCAAATGGCGTCGCAAAGTGGAACACCACGGTGCAAAACCGGCGGTAGACGTGTTTAAGGACGTGCTGGTCATCTAATCGCTAACCTGTAGTTCTCATCAAAATGCGGGATGGTTAGCGAATTTAATTTTCTCTTTAACAATTTGGACTTATGAATTATTCGTATAGCACAATCGGCTGTGCTATACTCCTTTTCGCTTTTTTGCCATAGGTTAGCGAAAACAAGCTCTCCAGGCCTTACCTACCAAGCCTTGGCGAAGGAGCG # Right flank : TCAGCTACGCATAGGTAGCTGGCTGCGACCCGTCGGTACATTACATATAAAGTCAGGGTTTCAACACTCAGCTACGCATAGGTAGCTGGATTTGCCGGTGGGCATTACCGCGAATATGGATTGGTTTCAACACTCAGCTACGCATAGGTAGCTGGTTCGCTCGCTTGGCGTTTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACCTATGCGTAGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGGCTACCTACGCGTAGCTGAGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //