Array 1 437632-439583 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIY01000004.1 Listeria monocytogenes strain FSL L7-0521 NODE_4_length_445228_cov_21.388614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 437632 36 100.0 30 .................................... ATTTATCTTCCGCATCTCTACGTGCTTTTA 437698 36 100.0 30 .................................... AAAAAAACTTAAAAGAATCAACTGATGCGC 437764 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 437831 36 100.0 30 .................................... TTTCGGTACGGAATTCCCGATTCGTTTTGA 437897 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 437963 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 438029 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 438095 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 438161 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 438227 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 438293 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 438359 36 100.0 30 .................................... ATATAAAACATTACAAGAAGCGGAAAACGA 438425 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 438491 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 438557 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 438623 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 438689 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 438755 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 438821 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 438887 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 438954 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 439020 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 439086 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 439152 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 439218 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 439284 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 439350 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 439416 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 439482 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 439548 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 188511-186797 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIY01000003.1 Listeria monocytogenes strain FSL L7-0521 NODE_3_length_503409_cov_18.714715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 188510 29 100.0 37 ............................. AACGCTTATAACAACGAATTACGGCACTGGCTCTGTT 188444 29 100.0 38 ............................. GAATCGCTAAAAAAAGACTATCCATATGACATTAATCA 188377 29 100.0 36 ............................. ACAGCAAACACACCACTACGAGGTATCTCCCATCTA 188312 29 100.0 38 ............................. AATTCTATCCCACAAACGTGTGTCTAAGGACATTGCCA 188245 29 100.0 35 ............................. GAAGTTATCGATGGTGCTTTTTTTGCTTTCACGGG 188181 29 100.0 34 ............................. ACAGCCAGGACATTAGAATTTATCTTACAACAGT 188118 29 100.0 36 ............................. GAATTTATAAATACTCGTTCGATGGTTGTGGCACTT 188053 29 100.0 36 ............................. ACGGTTAAAAAGTATGATATTAAACGTAACGGCAAT 187988 29 100.0 36 ............................. ATCCCAGAAATCGTGAAGATTGTGCCAGCCGGATAT 187923 29 100.0 37 ............................. TATTTCAGTTACTGATATTAAAGCAACATTTGAAGCA 187857 29 100.0 33 ............................. AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA 187795 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 187730 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 187667 29 100.0 37 ............................. AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA 187601 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 187538 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 187472 29 100.0 35 ............................. TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA 187408 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 187345 29 100.0 36 ............................. TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA 187280 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 187215 29 100.0 36 ............................. CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA 187150 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 187086 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 187021 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 186955 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 186890 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 186826 29 93.1 0 .......................C....C | A [186801] ========== ====== ====== ====== ============================= ====================================== ================== 27 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 205607-204866 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIY01000003.1 Listeria monocytogenes strain FSL L7-0521 NODE_3_length_503409_cov_18.714715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 205606 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 205541 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 205476 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 205412 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 205346 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 205282 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 205219 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 205155 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 205090 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 205026 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 204960 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [204936] 204894 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTACAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //