Array 1 363979-368407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKP010000002.1 Clostridium perfringens strain BSD2780061688_150302_G7 NODE_2_length_553159_cov_36.9678, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 363979 29 100.0 36 ............................. AAAGATAATTATGTATTAAATAATTTAGAAAAATTT 364044 29 100.0 36 ............................. TTTGTAGATATTCTTAAAGACCTTCATTTTAACCTT 364109 29 100.0 37 ............................. TGGAAATATATATTTGCTTCTGCAATTCTTCTAAGTC 364175 29 100.0 37 ............................. CTGTTTAAACACATACCATCTACAACAATCCAAACAA 364241 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 364306 29 100.0 36 ............................. GAAGAAGCAGAAGAATAGAGAGGGGCATATGCCCCT 364371 29 100.0 37 ............................. TTATCTACAAATGAACTTTGTAACATTATGTTGAATT 364437 29 100.0 37 ............................. TTACCTTTTAAGCTAGTATTTTCAGTATCTAGAGTCG 364503 29 100.0 36 ............................. AGTGTATAGAATACATTTTTTTGATAAGAAAGATAG 364568 29 100.0 37 ............................. GGTTGCGAAGCTATATTGGAATACGGGAATATAGATA 364634 29 100.0 37 ............................. TGGGATATTGCTAATGGGTTTAAAACTTTAGTAGCTC 364700 29 100.0 36 ............................. AGAAAGAAATCATCGAACCTATAGGGAAAAGCCAAT 364765 29 100.0 37 ............................. GTAGTGGTAAGTCATTACATGTTGCTAGGGATATTTT 364831 29 100.0 37 ............................. GTAAACTTTCTTAAAATTTTTAACTTTATAGCCGAGC 364897 29 100.0 36 ............................. AATAAATCATTATCAAAATCTTCTTGCTCCACTTCC 364962 29 100.0 36 ............................. TTCAAACTAACTAAAACAATAAGTAAAAACTAAGTA 365027 29 100.0 36 ............................. GCTACTACAATTTATAAAGATTATAATTCAATTTTT 365092 29 100.0 36 ............................. AGAAATTATCCGTTACGTTCAAAAGGCAGTTGGTTA 365157 29 100.0 36 ............................. AAGTGTAAGTTATGGATCATGACAAATAAAAAGCCT 365222 29 100.0 36 ............................. GATTTTATGGGGTATAACAAGCAGTACATTAAGTTG 365287 29 100.0 37 ............................. CAATATTTTGAAGGTATTAAATCACTTGGAGAGCAAG 365353 29 100.0 36 ............................. AAAGAAGTATTTAGGAGAGTTAAGCATTGGTTAAGT 365418 29 100.0 37 ............................. GTTAAAGATGCTCTTGTTAAGAATACTGAAGAAGCTA 365484 29 100.0 37 ............................. GGGTTAATGGTGAGAAATGATAATCAATGGAATGGCT 365550 29 100.0 37 ............................. AAAGTGCTTGTCTCAATTATGCTATTCATTATCTCAG 365616 29 100.0 38 ............................. ATTATAGCAGGAGTTACCGCTGTTGTAGGTGCTGGAGC 365683 29 100.0 36 ............................. CAGCTTGAAGAAGAAGTTAAGAAGAAATTGGATAGA 365748 29 100.0 37 ............................. AAAGTTAAATTTGAAGTTACTTCTACGTGTGAAATTA 365814 29 100.0 37 ............................. ATTGAAAGTACTGAAAATACTAATATTGAAGCAGATA 365880 29 100.0 37 ............................. GTATCAAATGTATATGTAAATGGTACTTCATTAACTG 365946 29 100.0 36 ............................. TTAATATGCGAAGATTATATAGATATGAGCGATTTA 366011 29 100.0 37 ............................. CAATTATTATATTTCTGTAAATTAAAAGGCTAAGCAA 366077 29 100.0 36 ............................. AAGGAAGTAGCAATAGGATGGAGAGCTAAGAATACA 366142 29 100.0 38 ............................. TCTACCTTGTCCCAATCTATTTGGCTCCATATATCAGA 366209 29 100.0 36 ............................. TTATCCCACTAAATATAGAACCACAACTTGTACAAC 366274 29 100.0 38 ............................. GGATTTATTAATAGATCTCCCAAAGGCTCCAATTAGTA 366341 29 100.0 36 ............................. GGTGTAGAAGTTGGTATGGATAAAACAATGCCAGAC 366406 29 100.0 36 ............................. GTTATAATAACCTTTTTTCTGAAATTTAACATAATA 366471 29 100.0 36 ............................. TATCAACTCTATTATAGCGTTGAGCTGTATAATAAA 366536 29 100.0 37 ............................. TGCAGAAGAGTGGGATTTTCATCCTGATTTCTGTTTC 366602 29 100.0 37 ............................. ATATGTATGTTTAATGTAAATAGAAAATGGGTAGAAA 366668 29 100.0 37 ............................. CTTCTAGCTCTAATATCTGCAATTAACTCATAAAGAG 366734 29 100.0 36 ............................. TCACCAGAACATCTAGCTTTTATTTCATTAAATACC 366799 29 100.0 35 ............................. CGTACATTTAAACTTTATAAAAATACTTCTGAAAA 366863 29 100.0 36 ............................. TTAGCATCATAAATTTTTAATTGATACTCTACACTC 366928 29 100.0 37 ............................. GTCAATTATTTACCTCCTTTCTCTCCAGATCTAAATC 366994 29 100.0 37 ............................. TTATTTAAAGCTATTGCTTTTCTTTCTTTTAAAGCTG 367060 29 100.0 37 ............................. TTCAATTTCCTCACAACTAACACACAAACGTATTTTA 367126 29 100.0 37 ............................. CTCAAAGTAAAGCCCAAAAATTCTATAAACTTATTAA 367192 29 100.0 35 ............................. GCTATTAAAGATGTTAAACCACCTATGTGTTGTCC 367256 29 100.0 37 ............................. ATTACTTTTAACTCTACAAGCTTTAAGTAACTCTCTA 367322 29 100.0 42 ............................. TGCCTTCTAGTGTATCATTAGCACTTATATAACTTCCAGTAT 367393 29 100.0 36 ............................. AGATTATGTTAAGAAACTTCAAATGGCTACTACTTG 367458 29 100.0 36 ............................. CAATTATTTATCTATATTATTATAATAGCCAATATT 367523 29 100.0 37 ............................. AGGGATTAAATAATCAGCAAAAGAAAAATCTAAAAAG 367589 29 100.0 36 ............................. ACTAAGAAAGCAGTAGCTTTATTATTAAACAAATAT 367654 29 100.0 37 ............................. AATGATAAGCCTATAGATAAGCCAGTAGATGGTACTG 367720 29 100.0 37 ............................. GATGATAGTGATTGGGATTGGAATACTTTTATTGGCG 367786 29 100.0 37 ............................. TGTTCTAAATTACTCATGTTAATATCTCCATTCAGCG 367852 29 100.0 37 ............................. GATGAGGTTGAGGAGATCATAAAATAAGTATTTTAAA 367918 29 100.0 36 ............................. GGTATTCTTTCATCATATTCTAAATGATTAGCTGAA 367983 29 100.0 37 ............................. TTGCACACCTCTACTATTTTTGAATTACAACAATTGT 368049 29 100.0 36 ............................. ATAACAATTAAAAATTTACACGCAAATAAAAAAATA 368114 29 100.0 36 ............................. AAGACATTTGCTATATTTACTGATGATGGTGATATA 368179 29 100.0 36 ............................. TACCTTTTAATTTATCTTTTTGTGCTTTATAGGTAG 368244 29 100.0 37 ............................. CAGCTATTCGTATTGTGCTTTAAATTATTAAGAGAAC 368310 29 100.0 38 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCATG 368377 29 82.8 0 T................GAA....C.... | A,C [368380,368404] ========== ====== ====== ====== ============================= ========================================== ================== 68 29 99.7 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAATAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //