Array 1 392350-390675 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTQ02000001.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0281 NODE_1_length_397766_cov_23.395670, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 392349 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 392288 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 392227 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 392166 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 392105 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 392044 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 391983 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 391922 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 391861 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 391800 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 391739 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 391678 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 391617 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 391556 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 391495 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 391434 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 391373 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 391312 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 391251 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 391190 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 391129 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 391068 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 391007 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 390946 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 390885 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 390824 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 390763 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 390702 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216876-213062 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTQ02000007.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0281 NODE_7_length_233469_cov_23.873259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216875 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 216814 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 216753 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 216692 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 216631 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 216570 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 216509 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 216448 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 216387 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 216326 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 216265 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 216204 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 216142 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 216081 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 216020 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 215959 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 215898 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 215837 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 215776 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 215715 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 215654 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 215593 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 215532 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 215471 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 215409 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 215348 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 215287 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 215226 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 215165 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 215104 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 215043 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 214982 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 214921 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 214860 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 214799 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 214737 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 214676 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 214615 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 214554 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 214493 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 214432 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 214371 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 214310 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 214249 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 214188 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 214127 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 214066 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 214005 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 213944 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 213882 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 213821 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 213760 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 213699 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 213638 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 213577 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 213516 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 213455 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 213394 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 213333 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 213272 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 213211 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 213150 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 213089 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //