Array 1 43-309 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDD01000116.1 Moraxella catarrhalis strain 2042044P 2042044P_NODE_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 92.9 32 ......................A.A... AAGGAGACATCAGCTCAGGCGTACACACAGCA 103 28 89.3 31 ....G..G..............A..... ACCGAGCGTAACCGCATTACCGCGCCAGCTT 162 28 100.0 32 ............................ TGAGTTGTACGCATAAAATGCCGTTTTGCTGT 222 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGAAA 282 28 92.9 0 ...A.......................C | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CGCTGAGAAAAAGAAGAAACATTAGTAGCTAAGTAAAACGGAC # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCAAATCCCTTGAAAAATTTATACTTCACAATTATGCAGATGGGGAATTTATATTAA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62406-60696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDD01000088.1 Moraxella catarrhalis strain 2042044P 2042044P_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62405 28 100.0 32 ............................ TCATCAATACCAATGCGATGCTTAACGGTAAT 62345 28 100.0 32 ............................ ATTAGCACCAGTGCCATCTTAAAAGGTGATGC 62285 28 100.0 32 ............................ TGACTATCAACACTAAAATTACTGCCAATGCT 62225 28 100.0 32 ............................ CCGAACATCCGAGGCGGTAGTATCAGCATCGG 62165 28 100.0 32 ............................ AAAGTGCCAACCAATTATAACCCCATCACTCG 62105 28 100.0 33 ............................ ATCACGCCTAATAGCACCTCCGAGCTTGTCAGT 62044 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 61984 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 61924 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 61864 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 61804 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 61744 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 61684 28 100.0 33 ............................ AATCAGGGGGGCAAAGGACGCACGCCACAAATT 61623 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 61563 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 61503 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 61443 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 61383 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 61323 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 61263 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 61203 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 61143 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 61083 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 61023 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 60963 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 60903 28 100.0 32 ............................ TAGCACCGCCCAGCCGCCCACACACGCACATC 60843 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 60783 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 60723 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGTGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 559-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDD01000061.1 Moraxella catarrhalis strain 2042044P 2042044P_NODE_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 558 28 100.0 32 ............................ ATGGGCGGAGACGGTGGTGGTCTTGATGATTT 498 28 100.0 32 ............................ AACCCCAATTTGGGGGCAAGTGTGGACATGGA 438 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 378 28 100.0 32 ............................ ATATCGCTAAAATCTGTGCCAAGCGTATCATA 318 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 258 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 196 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 136 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GGTTTATACTAAC # Right flank : AGCACTTTCAATGCTTGGTATCTTGCTGTTAACCTTCACGCCCACACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //