Array 1 18424-18125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOM010000028.1 Streptococcus lutetiensis strain N105 No105_ctg028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18423 36 100.0 29 .................................... TGATCGTACAAATGAGATTACTCGTGTCG 18358 36 100.0 30 .................................... CAAAGCCAATTGCTGTGTTATCGCTAAACA 18292 36 100.0 30 .................................... AAGCGCTACTGTTGGCGAACCTGGTGCGAT 18226 36 100.0 30 .................................... CTGAGACTCGCAGAGATATCTCAGTTCTTC 18160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 TATTTGCTACCATGCTATTTTGAATGGCTCTAAAAC # Left flank : GGCAAACATGAAATAAAAGCAGACAAAGCCAATGAAATAGCTAAACTGTTCAATGTTTCTGTTTCCTATTTACTGGGCTATTCTGATAAAAAAGAGCCATATTATAGTGATGAAATACTTTTAGATAATGGTAGCGGTGGCGTTTCTTCTCTTAGCTTTAAACGTCATAATGACTTACAAAAAGAGTACGATAAGCAAATTAGAAAAGATTTTATTAATTTCTTGCGTTCATATGATTTTGTTATTAGTGACAATGAAATAAAGGTACTCTTAGAACAGATTTCAAGTTTAAACATTAGTACAGTAGCTCATATTGACCGTGAAAGAGTACTCCAACAAGTCAACCCTAAAAAATATCTTATAGAAAATGGATATAAAGAATTAGGTGACTTGTTCCAATCTAATAAAGGGATTGATGACTTTTATAAAGAAAAAGGTTACGACCCAGAAAGCACTTTATAAAATCACCCCAACCGATAACGATTAGGGCGGATAATATT # Right flank : CTCAGACTCTAAAACCTTTATAGCCTGCCTGCTGTAGTTAAGAGAAGAGGTTACAAATGGTAAATATTAAGAAAATCACAAAGAAAAACGGTATTACTGTGTACCGTGAACAAATCTATCTAGGTATTGATTGCATGACTGGGAAACAAGTCTATACAACTATTTCAGCACCTACAAAAAAGAACTCAAACAAAAACGTGAGTTCAAAATAAACAAATTTAAAGAAAATGGATACACGCGCCATAAGAGTGTGAGTGTTAAGAACTACCGTGAACTAAGTGAACTGTGGTTAAAAAACCATAAGTTAGAAGTTAAACCACAAACATATAGCCAAACAGTTAGCGAACTAAAAACGTACCTTTTACCTGTGTTCGGTGATATTAGGGTAGAAAAAATCACACTCCCAATGGTTCAAGTTTTCGTTAATAAAATAGCTAACAACCCTAACCCTGGTTCGGTATCTCTAAAAATAATCTTGTCTATTAATAAGCGTATTTTAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTGCTACCATGCTATTTTGAATGGCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 96636-104191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOM010000003.1 Streptococcus lutetiensis strain N105 No105_ctg003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 96636 36 100.0 30 .................................... AGTTAGTAGTGAAACGACCTAGAGCACCAC 96702 36 100.0 31 .................................... CAATTATGACTGAAGAATATAGGCGAGGTCG 96769 36 100.0 30 .................................... TTTTGGTCTTTAAGTGAGTCTAGGAATTGG 96835 36 100.0 30 .................................... AGTAACCATTGGCGGTGTTCAATCGCTAGT 96901 36 100.0 30 .................................... TTGTAAAATTGATATATCCTTTTTGTGCCG 96967 36 100.0 30 .................................... ATAATGATTGTGTTTTCTTTGAAGGTTTCC 97033 36 100.0 30 .................................... CTCTGGATGACCTTGGAACTGAAAAAACGT 97099 36 100.0 30 .................................... ATCATGTTGCCTTTGACATTGATCTTGTCA 97165 36 100.0 30 .................................... GCTCGTCTAATAATTCAAGTTGGTTAAATT 97231 36 100.0 30 .................................... CACATTCCCCCATGCGCTCCAAATTCGTAT 97297 36 100.0 30 .................................... TACTCAATGCCATACGACATTCACCGTTAC 97363 36 100.0 30 .................................... ACTGGATAGGTAAAATCAACGCCATCAGTA 97429 36 100.0 30 .................................... CTCTACAACGCCTTAGAGGTGTTGACCTAT 97495 36 100.0 29 .................................... GACGAATAGCGAACGTCGTACGACGATTT 97560 36 100.0 30 .................................... ATTCGGTTGACGTGTCTAAAATCGTTGGTA 97626 36 100.0 30 .................................... TCCAGAATTGTTGAAAGGAAAATAGAATGA 97692 36 100.0 30 .................................... AATCAGAGGTAGAGCGGTAGTGGTAGTCAG 97758 36 100.0 30 .................................... GATTGGTTCGCCACCAAACGCTTTGGCAGA 97824 36 100.0 30 .................................... AGTAATGCTCCAAATGCCACATTAACTATA 97890 36 100.0 30 .................................... AAGCTCTTGACGAGGTTAAAAAGACATTAG 97956 36 100.0 28 .................................... GCCTTACAAAAAACAAATTTTGACATCG 98020 36 100.0 31 .................................... ATATAAACAATATTTCTTATGGTTAAAAGCA 98087 36 100.0 29 .................................... AATCATACAACGGATTAACAGGAGATTAT 98152 36 100.0 31 .................................... CACGGGCTGAAGAAGAGGGATACAATCTCTA 98219 36 100.0 30 .................................... TTGATAACGAGCGAGTCATGGAAAAACTTG 98285 36 100.0 30 .................................... AAGGCTGTTAGCAAAACGTGGGATAACCTC 98351 36 100.0 30 .................................... ATCTAAAAGCTGAGATTGATAAATGGGGCT 98417 36 100.0 30 .................................... CAAACACACGAAGCACGTTGATGCCGTTTC 98483 36 100.0 30 .................................... TTAGCTAGGCTATATGGAGTGAAATGGATA 98549 36 100.0 30 .................................... AAGATATTACTCAAATCGTCTCAAGCGTGA 98615 36 100.0 30 .................................... AGATGACTGCTTGATTGTCGAACACACAAC 98681 36 100.0 30 .................................... GCGGTGCTTCGATTACTTGGGAAATCCCAG 98747 36 100.0 29 .................................... AATATTCTCCTCCTTTCCCTGAAAAGTTA 98812 36 100.0 30 .................................... ATGTCGTCCTGTTAACCGACACGTACTTTC 98878 36 100.0 29 .................................... TGCTAACCACGGCGTGTATGAGTTGGCAG 98943 36 100.0 30 .................................... CTACAAATATCGGAGCGGGTGCTTTCGAAA 99009 36 100.0 30 .................................... AATGCTAAACGCGGTCTTGCTTTCGCAGTT 99075 36 100.0 30 .................................... ACCGCTTTGACGTAGCTACTGTTGATAACG 99141 36 100.0 30 .................................... TTTTCCATAGTGAAACAAGTAAGAACGCTC 99207 36 100.0 30 .................................... ACATTGTTATTGTCATCTTGCCCAGATGCG 99273 36 100.0 30 .................................... AAAGCACCAAACAAAATTATCTGAATAAGT 99339 36 100.0 30 .................................... ACTCTTGAATTTCTTCGACTAAGTCTTCGT 99405 36 100.0 30 .................................... GATTGGTTCGCCACCAAACGCTTTGGCAGA 99471 36 100.0 30 .................................... AGTAATGCTCCAAATGCCACATTAACTATA 99537 36 100.0 30 .................................... AGCTTAGCGAAGAAGAATTGATCAACAAGC 99603 36 100.0 30 .................................... TGGTGTCAGCGTTGATATCATCCCAACGAT 99669 36 100.0 29 .................................... TGGAGTACCGTTTAGAATAAGGCGATATT 99734 36 100.0 30 .................................... TGGCTGCTGACCGTTTGCGACTAATTGAGT 99800 36 100.0 29 .................................... ATGCTGCTAAGACGAAAGTCAAGAAAGCG 99865 36 100.0 30 .................................... AGGCGCAATCTGAGCTGTTCTGACGACTGT 99931 36 100.0 30 .................................... CTGTTGATAAAGAAAGCGGTGTTTCACAAT 99997 36 100.0 30 .................................... CTGTATTAAAAGCACGTCTCTTCCGTAATG 100063 36 100.0 30 .................................... AAAAAATGATGGATATCAAAATTCAGATTG 100129 36 100.0 32 .................................... TTGCTCTTGCATTCATCTACCTTAACCTTTCA 100197 36 100.0 30 .................................... CTGTATTAAAAGCACGTCTCTTCCGTAATG 100263 36 100.0 30 .................................... TGATTGGATATATTTCACGTCATCTTCAGT 100329 36 100.0 30 .................................... ATGGACGTCAGGTAGCAACGTGTTGACCGG 100395 36 100.0 30 .................................... GCGTAATCGATTTAATACCGACACCGTCAT 100461 36 100.0 31 .................................... CCGGTGTCCAAGATTATGGTAACCCTCTAGA 100528 36 100.0 30 .................................... CCATTCCAGTTACTTCAACTGTGACGTGCC 100594 36 100.0 30 .................................... CTCAACAAGCCGAAGTTCCCGCTACTCAAA 100660 36 100.0 29 .................................... CATTGTTGACTGGAATTTTTCAATCGCGT 100725 36 100.0 30 .................................... AAATTTAAAAATAGAAAAGAGGTATTCCTT 100791 36 100.0 30 .................................... AATTGATGTCTATCATGAGTGCAAAAGAAA 100857 36 100.0 30 .................................... TGTCAACACCGTCTTTCAAACCGTCCCAAA 100923 36 100.0 30 .................................... CGTGATTCCAACAGACGTTGCTAAACGCGG 100989 36 100.0 30 .................................... ATGAAGCAAATAATCCAAAACGAACCTTTT 101055 36 100.0 30 .................................... CAAGTTCACTAGCGTTCAATACCTCTGAAC 101121 36 100.0 30 .................................... ATTTTCTGTATTAGCTTCAGTTGTGACTGT 101187 36 100.0 29 .................................... CGTCCTAAGTTCTGGGAAGATCTCGACAG 101252 36 100.0 28 .................................... TTTAATAACTTTATTAAACATGTACTGT 101316 36 100.0 30 .................................... CTTCGAATGCTTTCTTTTGTACTTCTGGGA 101382 36 100.0 25 .................................... CTAATTTGCTACTAGGTTATATGAA 101443 36 100.0 30 .................................... CTGGCGTTTCTGGTGATACGTTCAGTGGTG 101509 36 100.0 32 .................................... ACAACCCAGAAAGCGGGCTATTGGACGAATAT 101577 36 100.0 30 .................................... TTGCTACACTAAACGATGGCAATGACAGTC 101643 36 100.0 31 .................................... CGAGTATATGTGCTTGATGTGTTTACATATT 101710 36 100.0 30 .................................... AAATCAATGAACAAAAGAAAGTGGTAATTC 101776 36 100.0 30 .................................... AATTTATCGTTGAATGAAATAACAAAACTA 101842 36 100.0 30 .................................... GTGAAAATCCTAGAGAGTTTTACACATTAT 101908 36 100.0 30 .................................... AAGTGCTGTTGGATAAACTAAAAGAGACAT 101974 36 100.0 30 .................................... CTGTTTATTGTGAGGGGTGATGTGAATGGG 102040 36 100.0 30 .................................... TTATCTTTAACTTTCCGCTTGATTATCGAG 102106 36 100.0 30 .................................... TCAACTTATGTAGATACCCAATATTTACTG 102172 36 100.0 29 .................................... CAATCTATGGAAAGGGGTGGTAATTATCG 102237 36 100.0 30 .................................... CTGGCGTTTCTGGTGATACGTTCAGTGGTG 102303 36 100.0 32 .................................... ACAACCCAGAAAGCGGGCTATTGGACGAATAT 102371 36 100.0 30 .................................... TTGCTACACTAAACGATGGCAATGACAGTC 102437 36 100.0 31 .................................... CGAGTATATGTGCTTGATGTGTTTACATATT 102504 36 100.0 30 .................................... AAATCAATGAACAAAAGAAAGTGGTAATTC 102570 36 100.0 30 .................................... AATTTATCGTTGAATGAAATAACAAAACTA 102636 36 100.0 30 .................................... GTGAAAATCCTAGAGAGTTTTACACATTAT 102702 36 100.0 30 .................................... AAGTGCTGTTGGATAAACTAAAAGAGACAT 102768 36 100.0 30 .................................... CTGTTTATTGTGAGGGGTGATGTGAATGGG 102834 36 100.0 30 .................................... TCAACTTATGTAGATACCCAATATTTACTG 102900 36 100.0 29 .................................... ACAAGGTAAATAATACAATTAAAATAAAG 102965 36 100.0 30 .................................... CAATACGAGGCTGAGTATGCTAAGCAGCGT 103031 36 100.0 28 .................................... AAGCCAATTGCTGTGTTATCGCTAAACA 103095 36 100.0 30 .................................... AACTTCTTTTTCATTCAAAACATTATAGTG 103161 36 100.0 30 .................................... AGTAATGTCATTACCAACAATAGTACAATT 103227 36 100.0 30 .................................... AGAATGCTAGCAACCAACATTTAGATAATT 103293 36 100.0 30 .................................... GATATCCGACTTATAGCCAGCGTTTCTTTG 103359 36 100.0 30 .................................... ATATTTGCATTTATGAATAGCGCTCCTTCC 103425 36 100.0 29 .................................... ATGTTTCTTTGATTGTACCCTTGAGCCAA 103490 36 100.0 31 .................................... CTTTAATGGTTTCTTCGCCTAAAACGTTGTT 103557 36 100.0 30 .................................... CTGTGCCAAAACGCTTCCGTAAACAAGTAC 103623 36 100.0 30 .................................... AATTAATACCTGCTAACAACACACGATTGC 103689 36 100.0 30 .................................... ACCTACAAAACAACAGTGCTAAGCATAATG 103755 36 100.0 30 .................................... ATACATTATCAACACCTTCTCTAACACTTT 103821 36 100.0 30 .................................... TCGGTCAAGAATTTCTTGATTTATTTTAGC 103887 36 100.0 31 .................................... CGTTGGGAAACTTTTGGAAAGTGTAAACTAA 103954 36 100.0 28 .................................... AACCTGTTTAAAATATCGAAAAATACCT 104018 36 100.0 30 .................................... GTTCTTGGACGTCCGTCATTTTGCTGGCGT 104084 36 100.0 30 .................................... TTGTTTAATCCCACCAGACAACACCACTAA 104150 36 88.9 0 ....................T...AAA......... | A,C,TAA,T [104172,104179,104182,104186] ========== ====== ====== ====== ==================================== ================================ ================== 115 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTAGGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 104793-105291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOM010000003.1 Streptococcus lutetiensis strain N105 No105_ctg003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104793 36 100.0 30 .................................... CTGACAGTACCAGTCAAAAAACAGCTACTT 104859 36 97.2 30 ........A........................... AATTTATTTATAATTATGATATAATAAATA 104925 36 100.0 30 .................................... GCAGACCTTCTATCACCTGTAGATTGTAAA 104991 36 100.0 30 .................................... TTCAAGACCAGCAACCATACGAAGCGTTGT 105057 36 100.0 31 .................................... AAAGCAATCAATGAAGATACGTCACTTTTAA 105124 36 100.0 30 .................................... TAAAAAAGCCAGACTTAAGTGAGACGCTAT 105190 36 100.0 30 .................................... TTGAAGTCATTGGTAACATTTATGAGAATC 105256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGA # Right flank : TGTGGCTACTAAATATGAATACACCAAACCCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTGATGAGTTGAGTTTTTAGACTCATTGTCAACTGTAGTGGGTGACTTATAGCTAAGCACGAGAGGAGACGAAATGCGTCTTCTCTTTTTGCATGTTTAAAGCGATAAAGATACGTTTTTTAAAGTTGTCAAAGTTCCTGAATCCAAAGGCATTACGCTTGATGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //