Array 1 1033529-1035508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036166.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1033529 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 1033590 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 1033651 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 1033712 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 1033773 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 1033834 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 1033895 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 1033956 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 1034017 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 1034078 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 1034139 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 1034200 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 1034261 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 1034322 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 1034383 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 1034444 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 1034505 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 1034566 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 1034627 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 1034688 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 1034749 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 1034810 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 1034871 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 1034932 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 1034993 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 1035054 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 1035115 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 1035176 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 1035237 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 1035298 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 1035359 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 1035420 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1035481 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1051772-1053204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036166.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_ww281 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1051772 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 1051833 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 1051894 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 1051955 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 1052016 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 1052077 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 1052138 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 1052199 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 1052260 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 1052321 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 1052382 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 1052443 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 1052504 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 1052565 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 1052626 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 1052687 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 1052748 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 1052809 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 1052870 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 1052931 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 1052992 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 1053053 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 1053114 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 1053175 29 96.6 0 ............T................ | A [1053202] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //