Array 1 26266-25505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYXY010000014.1 Streptomyces sp. H28 NODE_14_length_26363_cov_11.449687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 26265 33 93.9 28 ..............................TA. ATCAAAAACGGCTCCCTCGCGCGCGCAC 26204 33 90.9 29 .............................GT.C CTCTCCCCTCTTCGTGCATGCGGAAGGGG 26142 33 90.9 28 .............................T.CT CGCACATGATGGCGGCGGCGTGGTCGGT 26081 33 100.0 28 ................................. CGCACTCCAGCTCGACGAGGATGACGCG 26020 33 97.0 28 ................................T CCGCCCCGGTGGTGATGCGGTAGGTCTC 25959 33 93.9 28 .............................G.C. CAGGAACACCGCAGCCCTGATCGTCACC 25898 33 97.0 29 ..............................G.. CGCTGTCGCGGGTCGTGCGGGTGGCGGAG 25836 33 93.9 28 .............................GG.. AGGGTACGGAGATTCAGGATCTCCGTAA 25775 33 90.9 28 .............................GA.A CGTGGGTCTGCTTCGACGAGACCCACCT 25714 33 100.0 20 ................................. CCCACGATCACCTTCGGAGG TA [25684] Deletion [25662] 25659 33 87.9 28 ....C........................TT.A TGACGTCCACGTCGGGGCTGGTGGAGTG 25598 33 90.9 28 ........A.....................A.C GGGAGGCCGTGGTCGCCGCCGTGGCGTC 25537 33 90.9 0 ..............................GCT | ========== ====== ====== ====== ================================= ============================= ================== 13 33 93.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : CCCGATACAGTCACCCCCATGCAACCCAACCCACCACACCACATCTCACTCGAGGCAAAGAACAAGCAAAGCCCCTCCTAAACCGCAGGTCAGAAAG # Right flank : CATCATCTGCTGCGGGTGTGCAGCCGAGCCGAGGTGACGGCTACTGCGGCAGCGGGCCGGCAAGGCCACAACGATGCGCTCAGCAGCACGGTGTACAGGAGGTCGGCACGGCGCACGCTGTGGTGGGCGCGCCGTTGGAGAACGGGCGCACGCCGGTGGAGTGCAGCATGTGACGCGGAACACGTTCGGTGCGCGGAGGAGTGTTCGCCATCCCGACAGGGCCGGGTCATGCCTGGTCAGGGCATCACAAAGCGTGACTAGCGGTGCTTGTTGAATACGGCACAGTGCTGGCGGGTGGGGACGGCCGGTGATTTTCTGCGGAGCGGCATGAGTGATCGGGCTCGCGAATCACTTAGGTAGAGGACAGGCCCAACGGCCCGTCGGCGTATGCGAGTTGGCGCAGGGTCCCTTACCCCTCGATGGAGAGGAACTCGCTCATGTCCCCTGCCGACGGGAGGCGTTCGTGAGTCACGACGACGCACAGGAACGCTCCGCGCAGG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1613-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYXY010000272.1 Streptomyces sp. H28 NODE_272_length_8058_cov_23.369689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1612 33 84.8 28 ................T............TCTT CTCGGGCGACGCGGGGGATCGCCCGAGA 1551 33 93.9 28 ......................C.........G ACGTCGTCTCCATCGACTGCCTGTATGG 1490 33 87.9 28 .............................GGTT CGGCCGGGTCGTCGTCGGCGGTGCCGGT 1429 33 90.9 28 .............................GC.G AAGGGTTCGCGTCCGCCCTGGACCGGAT 1368 33 97.0 28 ..............................T.. GGAGGATCTTGCGGTGGTCGGAGGTGAG 1307 33 93.9 28 .............................T.T. CGGGCATCAAGGGCGTCTATCAGCATCC 1246 33 93.9 28 .............................AC.. CTGGCCTGCGGTCGAGCGTGCGCTGCGC 1185 33 93.9 28 ..............................C.G TTCGTGTTGGTGTACTGCTGCTGGCGCC 1124 33 90.9 28 .............................AGA. CTACGGGGACCTCGAAGCTGGGGTCATC 1063 33 87.9 28 .............................TCCT CCGTGCCGTGGGTGGCTTGCCCGGCGAG 1002 33 100.0 28 ................................. TCCGGGAACTCGCCTACCGTGGCGCGTC 941 33 87.9 28 ........T....................G.CT GGTTCGGCACCCGGGCCACGCTGCATGA 880 33 90.9 28 .............................GGC. GCGACGTGGTGCGGGGCCTGTGGACCGG 819 33 97.0 28 ..............................G.. CGGACTCCTCCAGCACGTCCTGAACGAC 758 33 93.9 27 .............................AT.. ACGGTACGTCACGGCACGTCTAGGGGA 698 33 84.8 28 ......T......................GCCT CGGGGTTCTGGTGGATCTCCAGGTCGCG 637 33 90.9 28 .......T.....................G.C. ACCATGACCAACCCGACCGCCGCCGTCG 576 33 72.7 0 ......TT........T.........T.TTTCG | ========== ====== ====== ====== ================================= ============================ ================== 18 33 90.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGC # Left flank : CATTTGGCGCAATTAGGAAGACCTCGTATCGAAGGGAATTAGACTGTGAGAGAACCTTGGGTACGCCGCGGTTACGACCAGATGCGCCTATGGATGCGGATGCCATTCGGCGCCACCAATCGGGCATGGCTGCACGGCGAGCTGGGCGATCGTATTCGTCCGGAATGGAATAACACGGTGCGCCCCGGGCGGTGGGAGATAGCGAAGCCGCACCTGAGGACGCTCACGACGGCTCTCGCCAACCGGTTCGGAGAGGCTCACGTCTACCTTGAGTTCTCTACGACGGAGCGATGCGACCGCAAGTGCCAGACAGCAGCCGGTGACGACTGCACCTGCTCCTGCCGCGGTGAACATCATGGCGGCGGAACCTACTGGATGGAATGGCAACTCGTTGGAGAGGACACTCTCATCGGTCCGGTCGGTCGCGTGGAACGGCACTACATCGTGAGGCGCGACGACATCGGTTTGTAGGCCGGCGTTGCACCGCGACGTTCGCCCTG # Right flank : ACGGGCACCGGCTGGTCATGTGGCGCACGTGCTCCTTGCCGACGGGGGTGTCCGGTCACGTGGCTGTGTGTGGCGTCTGTTCCGTTGGTGGGGTGGCCCAGTCGAGTCCGAGGGCGGCGAGTGCGGCCAGCTTGTCCGCAGTGAGCCTGGTCCGGCGGCTCTTGTGGTTGGACAGAAACACCCCCAGTTTCACGACGTGTTCCACGCCGTCGACCACCACGGTCTCCTCATGCCCCCTGGAGGGCGTCAGAGAGCCCGTGCGAGCCTTGAACTGCGCCAGCGCCGCAACACCCCGCGCGAAGGCCGCTGAACGGCCCCCAGACGGGCGTCTGCCCGCCGCCGCGTCTCCTGGTCCTGCCTGTGCCGGTGCGGTCTGCTCGGCAGGCTCTACACCCAGCCGGGCGAGTCGGTCGCGTTGCCCGTGGCTCAGGAGCGGCCAGTCCTGCCGCTGGGTGGCCAGCCACCGGCCGACGTCCATGCCGTGCACGACCGTCCCCGGT # Questionable array : NO Score: 3.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.00, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6256-3153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYXY010000101.1 Streptomyces sp. H28 NODE_101_length_14111_cov_20.721682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================== ================== 6255 32 78.8 28 .................C....G.G-....TCC GCAACAGCGGCGGGAAGATCGTGCAACT 6195 33 93.9 27 ..........T.....................C CGACCTCCTTCGGCTCACCCACGGCTG C [6166] 6134 33 93.9 28 .............................T..G CGAGCAGCAGGATCCGCTCGAACGCGGA 6073 33 90.9 28 .............................CA.C TGCTCCTCGGCTACCACCGCGCAACCGT 6012 33 97.0 27 .............................T... CGGGATCGCGCAGGGCCTGTCCGACCT C [5983] 5951 33 93.9 28 .............................C..G GCCAGTCCCGGCGTGGGGGCAGCCACGC 5890 33 97.0 24 ................................G GGCGGCGTGCGTCTGCCGCTGCCA TCTT [5858] 5829 33 93.9 28 .........................G......G TCGGCATCGCGGGGTGGATCGGCCTCGG 5768 33 84.8 28 .........................G...CTTC AGCCGGGGGCGACGTATCACGGGTGGAT 5707 33 90.9 28 .............................C.CC AGTGGCAGTTGGTGCGGCCGCAGCGGGA 5646 33 90.9 27 ..T.....................C.......C CAGCTTGGACAGGGCGAGGCCGGCGGC C [5617] 5585 33 93.9 27 ........................C.......C CAGCTTGGACAGGGCGAGGCCGGCGGC C [5556] 5524 33 100.0 28 ................................. CGAAGTGGGCAGGCCACTGCTCGGCGAG 5463 33 87.9 28 ........T....................CA.C TCCGGGAACTCGCCTACCGTGGCGCGTC 5402 33 87.9 28 ........T.....................ACT GGTTCGGCACCCGGGCCACGCTGCATGA 5341 33 90.9 28 .............................CA.C GGGAGGCCGTGGTCGCCGCCGTGGCGTC 5280 33 90.9 28 .............................C.AT GTCCAGGCTCGGAGGCGTCGGCAAAGGA 5219 33 87.9 29 ................T............AT.T TCCACGGGCATCAGCCCATCACGCTCGAG 5157 33 87.9 28 .........................G...T.CT GCAGGGCGTCGTCTGTCGCGAGCCCGGA 5096 33 87.9 28 .........................G...CT.G AGCCGGCCACGCCAACGGGATTGGCCCG 5035 33 90.9 27 .........................G.....CG GAGGCGTCGCTTGAGGTGAAGCAGCCC T [5006] 4974 33 87.9 28 .........................G...CTC. CGTGCGATCTCAACTTCAACCGGCCCGC 4913 33 81.8 28 .........T...............G...CATC TCACCGAATCCGAGGCGTCCGCCGAAGC 4852 33 90.9 28 .........C...................T..G CGGCGTCCGCGATCTGCCACGAGCACCA T [4842] 4790 33 90.9 28 .............................A.CT GTCCGCGATCGTCGCCGACGACAAATTC 4729 33 84.8 28 .................A...........TTCT GCACCGACCAGCCGGCCATCGGGGACAG 4668 33 87.9 28 .............................TATG CAGCAGGGGCGTGCACCCCAGAGCCCGC 4607 33 90.9 28 .............................C.CT TGGTGACGGACACCTGGCCGTCCGTGCC 4546 33 90.9 28 .............................T.AG GGATGTAGGTGGTCCCGGACGGCAGGGC 4485 33 100.0 28 ................................. CGACGGCACCTTCGCCGGATACGCCTGC 4424 33 93.9 28 .............................T..T TCGGGATGATGTCCGGGTCCTCCGTGCC 4363 33 87.9 28 .............................AACG TCGTCACGGGCTGGCCCTGGCACGCGGC 4302 33 87.9 28 .............................AACG TGCCCACCACGGAGCGCCGGGTGGTCAC 4241 33 97.0 28 ................................G CGCTACAGGGGCAGATCGCGGCGCTCAC 4180 33 100.0 28 ................................. GGGATTCGAGGCGGGCCTTGATGGCGCC 4119 33 93.9 28 .............................TA.. AGCATGGCGCGTTCCCGACGCGGCGTGT 4058 33 93.9 28 .............................CT.. CGGACTGGAAGGGCCCGCCGCGCAAGGA 3997 33 93.9 28 .............................T..G CGGCCAGGGCGTCGCGCTCATCCCCGCT 3936 33 90.9 28 .............................CG.C TCGGACCCTCCGAAGTCGGCGACCCCTG 3875 33 97.0 28 .............................T... GATGCTTGATCTTGTCGACATACTCGGC 3814 33 97.0 28 ...............................C. TCGCCCAGGCCGCCGGCGCCGACCTGAA 3753 33 100.0 28 ................................. GGGATTCGAGGCGGGCCTTGATGGCGCC 3692 33 90.9 28 ..............................ATC GTCTCGATCTCCGAACGGGTCTTGCAGC 3631 33 90.9 28 ..............................ATC GTCTCGATCTCCGAACGGGTCTTGCAGC 3570 33 93.9 28 .............................T..G GGGACGCCACGATGGTGCCGTCGATGCC 3509 33 87.9 28 .............................ATTT GGGCCACGACCGCCCGGAAGTTCACCCC 3448 33 93.9 28 .............................CT.. CCCCGGTCGTCAAGGGTGCGTCCGCGGA 3387 33 93.9 47 ..............................AC. CGCGGGGGTGTTCCGACCCCCTGATCACAGGGGGTCTCAGAGTCAGG 3307 33 97.0 28 .............................A... ACCAGAGGGTGCGGCTCCTGGGGGTGCG 3246 33 93.9 28 ..............................T.T AGGTCGTGGGGTTGCGGTACGAGTAGGC 3185 33 81.8 0 ..........................T.TTTCG | ========== ====== ====== ====== ================================= =============================================== ================== 51 33 91.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Left flank : CTCCAGCACCCTCCTCGTCCAGGCCGCCCAGCTCGACCCGGCACGCCTGCCCGCCGGATACGGCCAGGCCGACATCAAAAGCCTCACGCCGATGTTCTCCGCACTGCGCAAAGGACTCGGCGTCCGCTACCGCATCGTCCTCAACCCCGCCAAACGGGAACGGCTCCCCCTGCAAGAGAAAGGCAAGCGAGGACGCATCATGCCGCTCTCCGGCCCTGACGCCGACCACTGGTGGCTCCGCCGTGCCGCCGAAGCCGGCCTCGACCTCCACGTCCTGACTCCCACCACCATGGAACCCGGCCGCCCCCGCGGCCGGGACACCCCCCGCATGCGGCACAGCCTGATCCGCTACGACGGCACCGCCACCGTCACCGACCTCACCGCCCTCACCCAGGCTGTCCTGACCGGCATCGGCCGAGGCAAGCCCTACGGCGCGGGCCTGCTCAGTCTCGCCCCCGCGACCACCGCGTGAGCCCGCCGCCACAAGGCGGCCAGAAAGT # Right flank : ACGGGCACCGGCTGGTCATGTGGCGCATGTGCTCCCTGCCGACGGGGGTGTCCGGTCACGCCCCGCCTGACGCCTGTTCCGTCGGTGGGGTGGCCCAGTCGAGTCCGAGGTCGGTGAGCGCGGCCAGCTTGTCCGCGGTGAGCTTGGTCCGGCGGCTCTTGTGGTTGGACAGGAACACTCCGAGGCGGACCTCACTGCCGTCCGCGAGGCGTTCAATGTGTCCTCGGCTCACGGTGAGGGAGCCTGTGCGGGCCTTGTACTGCGCCAGCGCCGCAATGCCCCGCGCGAAGGCCGCTGAAGGGCCCCCAGACGGGCGTCTGCCCGCCGCCGCGTCTCCTGGTCCTGCCTGTGCCGGTACGGCCCGCTCGGCAGGCTCTACACCCAGCCGGGTGAGCCGGTCGCGCTGCCCGTGGCTCAGGAGCGGCCAGTCCTGCCGCTGGGTGGCCAGCCACCGGCCGACGTCCATGCCGTGCACGACCGTCCCCGGTTGCACCGACGCG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //