Array 1 222957-224235 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXP01000004.1 Clostridium collagenovorans DSM 3089, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 222957 30 100.0 36 .............................. TTGGATTATTACCTAACATACCCATTAATTGTTGGG 223023 30 100.0 36 .............................. CATTTTGCAGATGTATTAGCTATGGCTTCTAATGCA 223089 30 100.0 36 .............................. GTATATCCAATACCGTTATTTCCATCTCCTGCAGCT 223155 30 100.0 36 .............................. CCTATTAATGCCTCTATTACATTCTTTCTAATGTAG 223221 30 100.0 36 .............................. AACCAATATTTATTTGCATAAATACCACACCAATAG 223287 30 100.0 35 .............................. TCTACTTATTCTCCTTATACCATTCATAAATAAGA 223352 30 100.0 36 .............................. GGTTTATTCTGATATATCTAATATAAATACCGCTTA 223418 30 100.0 36 .............................. TGCTATACCTCCTAAGGAGGGGCAATGCCCTCTATT 223484 30 100.0 37 .............................. CAACTTGCATTACTTCATTTATTTCAGCTACTTTAGG 223551 30 100.0 36 .............................. AGAGAAATGCAAGCGAATGCACGAGACTAGGTATTC 223617 30 100.0 36 .............................. TAATGTTGTCTAAACTAGTTATAAATTGACCACTAT 223683 30 100.0 35 .............................. TGATCTTGACTAGCCCAATAAAACATTTTTCCGTT 223748 30 100.0 35 .............................. TTTAGAACCACCCCCACTGTGAAAATCTGCACCAC 223813 30 100.0 36 .............................. ATTTTCATCTTTCCGAAATCCTCTTTATACTCAACC 223879 30 100.0 34 .............................. TACTTCTTGCAAGTCTACTAAAATCCCAAACATA 223943 30 100.0 36 .............................. CTCCTTGACTATATTATACCATTTTGTAAATTTAAA 224009 30 100.0 35 .............................. ATCTTAATCCTAGTGTTTGGAAATATGATGATGTG 224074 30 100.0 35 .............................. GCATTTTTATTTTGCCATGCTCTCAACTCTTCATA 224139 30 100.0 37 .............................. TTTTGAAGTAGAAGGTGTATAAATGACTAATATTAGA 224206 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 100.0 36 CTTGAAGATTAACATTAGATGTATTTAAAT # Left flank : TGAAAATGCAGTAATACGCATATTTTCAAACTTAATAAACAACATGCTAAAACATGGAGAAAACTACACCAAGATATCCTTAAAGCAAAGAGAAAATGCTATAGTATCAGAATTCATAAACAATGCACCAAACCTTACAGAAGAAGATATACCCAAAATCTTCAATAGATTCTATATAGCAGATAAATCAAGAAACAGCAACAACACAGGCTTAGGATTAAGCATAACAAAAGCCTTTGTAGAAGAGCTAGGCAACGAAATCAAAGCCGAACTAAAAGAAGGAAAATTAAAAATAGAAATAAAGTGGAAATGTAGAAAATAAATTTACCAGGCATGAAAGAAAATAAATTGTCCTTAAAGCACTGATATAACTTGCTTTAAGGGCAGTTTTTTATAATTTATAGACTTTTTGTATTTTACTTGGTAAAATAATCTTAGAATCCTTTAAATACAAGGGATAAAGCAGAAATTCCATTTATAAGAATGGCTAATTTACTGTG # Right flank : TAGACAAATTTCAGGTGTTTGTTCTTTAACATATTGTGTTAAAGAGTAACAGTATATATTAATTTTAGCAATAAATATGGAATATTTTATACAAATATAGAATATATATTTGCATTTTTGTAATTATATTGTAGAATAGAAGGAAAGGGGGATAGTCATGAAAGTATATGAAATGAAATTGAAGGTTTTTATGTTACAAAGTATAGAATTGAATAATTTAAGAGAGTGTGTATGTAACTTAATAGATAAAAGCTTGTTTAAGGATGAGTTTACTGCTGAATTACATAATGAAAATAAATTTAAGTTTTATACTTTCAATAATTTATATCCTATAGAAAATGATAAGCTTTATAAAGCTGGTAATATATATACCTTAATAATAAGAACTATTGATGAAACCTTAGTAAAACATTTCCAAAAACATCTTGCTAATGAATATAATGAGCAATTAAAGGCTTTATTAATAGAAACTAGAGTTATTCCTAAAAGACATATAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGATTAACATTAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 233155-234699 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXP01000004.1 Clostridium collagenovorans DSM 3089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 233155 30 100.0 36 .............................. TGTCCTAAAAAAATAAATCACCTTAGAAAATCATCG 233221 30 100.0 35 .............................. AAATTTAAAAATTCTAGGAGGAATGAATTATGAAA 233286 30 100.0 35 .............................. TAGTTTGATAAAGGTCGACAATGAAAGGAGAAAAT 233351 30 100.0 36 .............................. CCCATTGATATACCAGTATTTTTCACTTGATTTAAT 233417 30 100.0 36 .............................. ATAAGTGCATCTACTAAGCTTGCGCAGCCTAAGGCA 233483 30 100.0 37 .............................. AGTAAAAATGAGTGTGAATTAGGAGAAATAGGTAAGC 233550 30 100.0 37 .............................. TTTGTTGGTCCACTTCTTTCACTGTAACCAATGGATC 233617 30 100.0 36 .............................. TCTGTTAAAGTCATCAAATTTTCCACTTCTCATACC 233683 30 100.0 36 .............................. AATTTACTAAAAGAGAAATAGAGAAGGCAGTTGAAA 233749 30 100.0 36 .............................. TTGTTAGCGGCTACGATAGCCTTTAATATTTTGTAA 233815 30 100.0 35 .............................. CCTAATTGAGCAACGTTAGTATTGGACTTTTGGGA 233880 30 100.0 36 .............................. TGGTTTGAAAGGGTTAAGGTTAGAAATAAATATAAC 233946 30 100.0 36 .............................. AATTGAGTTTATATGTAATCCATTCATATACTATAC 234012 30 100.0 36 .............................. TCGTTAAAATAGTTAAATACGTACACATTTTGCTTA 234078 30 100.0 35 .............................. GTATGGGTAATTTTCCTATACTTAAGCTAGGTGAA 234143 30 100.0 37 .............................. ACTAGTATTCTATGTCGTGTTCCATTAGCTTTTAGCC 234210 30 100.0 35 .............................. AAATTAATAAGTAACTATGCTAGAATTTACGCTAG 234275 30 100.0 36 .............................. CCTTCTTTAATATCTGCAATTACTTCTCTAAATGTC 234341 30 100.0 36 .............................. TAGTGAAAATACCAAGCATGCTTTTAGATTAAAACT 234407 30 100.0 35 .............................. TTAAAAGCTTTTATATATTTAACTTTCCACTCTAA 234472 30 100.0 36 .............................. TTTGTTGAATGGGTATTAGGAAAAGATCAATCACAA 234538 30 96.7 36 T............................. GGATTAAGTGTTGCCATAAGATAATCATTTCTTGTA 234604 30 100.0 36 .............................. GAATGTAGAGAAATTAGCAAAAATGAATTTGAAAGA 234670 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.7 36 CTTGAAGATTAACATTAGATGTATTTAAAT # Left flank : TAGGACTTTTAGCATAAAGGAGAAAATGTAAAAGGTGAGTAAAAAATTCAATTATAATTATGCATTTTTATTTTATGATGTAAAAGAAAAGAGAGTAAATAAGGTATTCAAGGTGTGTAAAAAGTATCTCTCACATTATCAAAAATCCGTATTTAGAGGCAGTATAACGCCATCTAATTTAATAAAGCTAAGAAAAGATTTGAAGATGGTAGTAAATGAAAGCGAAGATTTTATATGTATAGTTAAATTACTCAATGATGAAGTTTTTGATGAAGAAGTTATAGGTGTATCTGGTCAAAGTGGAGAAGATCTTATCTTCTAAATTTACCAGGCTTGAAATAAAATAAACTCCTTATAAACCATTGATTTTACTAGGTTTATGGGGAGTTTATTATAAGTTATAGACTTTTTGTATGTTACTTGGTAAAATAATCTTAGAATCCTTTAAATACAAGGGATACAGCAAAAATGCCATTTATAAGAATGGCTAATTTACTGTG # Right flank : TTTGGTGACAGTACTAATAAGTGAGGTAGGAAGTGAAGTTTATAATTGAAGAAGGTTTCAACATAAAGTAACCAACAAGAGAATTGTTATTTCTTATTGGTTACTTTTTTATTGTTAAGTTTCATTATTTTTCGAAGTTTTATTCTTTGGTATTCTGTAGGTTCTTATGGTTCTTTATTCTTAATGTACATTTCTTTTTCTATGAAGCTCATCATTTTGTTTCTCATATATAAGTAAACTGAAAATGCTAGTATTGTATTAAATGCAACAAGGAATATGCTATTTAATATTTTGGTTACCACATATATAACTAAAATTATTAAGGTGATTATGCATAATGCAAGAGTATTGTCTTTAAGCCATTTTCTTTTTAAGGTCTTTTTTATTTCGGTGATATTTGAGGTATTTTTCATGATTTCACCTTCTTTTATTTGAAATTATATCCATATTGTATTGCGATTAAGTGGTGTTGTAAATAGGGTGGAGGTAATATATTTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGATTAACATTAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //