Array 1 550-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMC01000040.1 Methanobrevibacter smithii TS96B Contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 549 31 100.0 36 ............................... ATGTCAATGTCAAATCCTTCAACGTACATTGTTTGC 482 31 100.0 35 ............................... GTATGGGGTTTATGATATTGAATTTGTTGATGGTG 416 31 100.0 36 ............................... ATCCGTTTAATTAAACAAACATCACCAATCGACCGA 349 31 100.0 38 ............................... TACAACAACAGATACACTGAAGATGACTATCATTACAT 280 31 100.0 37 ............................... AAAAATAAATAATTAATTCATCTAAAGTATACTTTTT 212 31 100.0 36 ............................... CACATATATCCTCTATCAAAAGGATATTATATGCTC 145 31 100.0 33 ............................... TCTAAAAATAAAGGTTATTGAAGATTTTTAGGT 81 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 8 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : GTTGGTATTGGTGATGCTAAAGGTGTTGTTGTTCGTGATGTTTTAGGTGAAGGTTTAGTTTTCGTTAGTGCTTCAGATGGTGGAGTATATGATGAAAATACACGTACTGTTACTTGGATTGTTGATTTGGCTAAAGGTGAAAGTAGAAGTTTTTACTGTTAATGCTACTGTTAGTCGGTTATGGAAATGTTTCTAATTCTTTAGTTGTTGGTAATAAGACTGCTGGTGTTAATGTGACTGTTCCTGAGATTATTCCTGATAAAACAGTTAATGTTGCTAATCCTAATTTCGGTGATAATGTGACTTATACTGTTACTGTTTCTAATGATGGTATTGGTGATGCAAACAATGTTGTTATTGTTGATAGGCTTGGTGAAGGTTTGACCTTTGTAAGTGCTTCTGATAATGGTGTTTGGGATCCTGTTAAACGTACTGTTACTTGGATTGTTGATTTGGCTAAAGGAGAAAGTAGAACTTTCTATGTAAATGCTACTTAGCCA # Right flank : TCTTTAAAACTTGGGTTAATGATACTAAGGATATTAGTTAGAAATAAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 35-997 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMC01000039.1 Methanobrevibacter smithii TS96B Contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 35 31 100.0 37 ............................... ACAGTTCCCAATTATGTTATTAATTCATTTTTATTGT 103 31 100.0 34 ............................... AGCAATAGACAATGGAGAATTTGATAATAAATTC 168 31 100.0 38 ............................... AGGATTATGGGTTGGATTGATACTAACACTAATTTTAA 237 31 100.0 38 ............................... TGTTCCTTATTATTTGATTAAATACCATTTTTAACACT 306 31 100.0 33 ............................... CATTATATGCAATGAGTGGAGGATTTTATGCTG 370 31 100.0 35 ............................... GTAGGAAACCACGTACGTGCACGTACGTACGTACG 436 31 100.0 35 ............................... AACATAAACTACAAACATTACTATCTTCAGCAGTT 502 31 100.0 34 ............................... CAATACTTGTAGTGTGACTCATATGCTTCACACA 567 31 100.0 34 ............................... TCAACCCCCTGAAATTTTTTCATTTCAGAAGGAG 632 31 100.0 36 ............................... TTGTATTCGTTTAGCACTCCATCGAAATCCACACAT 699 31 100.0 37 ............................... CATCTTGCTTATCAGGAAGTAAGGTTCACCACAACAG 767 31 100.0 35 ............................... AAGGATAATCCTGATACTCTGAAAGGATTTGCTTT 833 31 100.0 36 ............................... TTCAAAACTCTTGGGACAACTTCTCTGCAGAGTATA 900 31 100.0 36 ............................... GTACTTCACCGGACTCCATGCCTTCAGACCATTCCA 967 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 15 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : ATATGTTCGTGAGTTTGAAATAATTTTGATCTGCG # Right flank : TTCATTTTGCACCTATTGATATATAAATTTAATGATGGTTAGAAATAAGGCACTGTCAATAACTTTGGTGATGAATGCCTCGGAAGTTTCTCTGCACCCAGTATTTGGTTTTGAGAGAAAATCTTGTCCTAGCTCCTTCAAAAGTTCTTAATGTTTTTTTAATATGCTTAGGGAAAACTTTTTGAAAGAAATTTTCAATTTTATTACTTGTAGTTGGAACATTACTATTTTCAAGATGAAATGTTATTGTTTTAAAGTAAGGAATGATGAAAAACCACAATAAATTAAAAATAACTTTCGGCAAATTGTTTTGTATACTAATAAGATAATCTCTACCTTTTTTAGCAGATTCTAAATCATTAGCATCTAAAACATCAAAAACTAATTGTTTACAATAATTTAAGTATTCCAATTCTTCATCAGAATAATTATTTCTTTTCTTATTCTCCCTAATGTTCCTGTTTATCTTTTGTTTTGTGTGAAACATACAGAATTGATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 31329-35647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMC01000031.1 Methanobrevibacter smithii TS96B Contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31329 37 100.0 35 ..................................... ATCAGGTAATTTAAAGCCTATGGAGTCTGCATATT 31401 37 100.0 35 ..................................... TTGTTTCAGCTGTTTTATAATATTTGTGTCTGTGT 31473 37 100.0 37 ..................................... CATCTCCACGATGTAGTTTTTGTTGGTTACTTTCAAT 31547 37 100.0 34 ..................................... ACTACATCTCCACGATGTAGTTTTTGTTGGTTAC 31618 37 100.0 35 ..................................... TTCCTAACGAATGGCAATCCGTATGTAACTTCGTT 31690 37 100.0 36 ..................................... TTTCTAAGCATTTTTAGAAATGCTTGTTTTTTTTGA 31763 37 100.0 38 ..................................... TTGTTCTTCGTATTGACTTATGATTTCAGCTATTTCAT 31838 37 100.0 35 ..................................... GTCCTTGAAACTTTTTCAACATTTTTATAAATCTT 31910 37 100.0 36 ..................................... GATTTATCCCATGTATGATTATTGGTGCTTATTACA 31983 37 100.0 36 ..................................... TTCGTTTTGATTGAATTTTTCATTAATCATTTATAA 32056 37 100.0 37 ..................................... CTTTTAAATTCATAATTAACACCTTAACGGGCTACAA 32130 37 100.0 36 ..................................... TAATTTTATCTTCTTTATTGATTTTCTCTTGTCTGT 32203 37 100.0 35 ..................................... CAATTTGCTAAAACACTATCAGTGTGTTTAAACGT 32275 37 100.0 37 ..................................... TTTTGGCTATTTTAAAGCCTAATTTTATTGCATTTTC 32349 37 100.0 34 ..................................... TTTTTCTAAAACAATTTCTTTATTATTGTTAATG 32420 37 100.0 38 ..................................... TATCTATTAATCTATTAGATAGACCGGCTTTATTACAA 32495 37 100.0 36 ..................................... ACATTTCCTCCATGCGATTGCTTAATTCTTCTCTTT 32568 37 100.0 37 ..................................... TTTGTAAAAATTCTTCTTTTAACATTTTACTGCCTCT 32642 37 100.0 36 ..................................... TATTCAGTATCTGGAATTTCTTCGTCCAAATACTTT 32715 37 100.0 35 ..................................... TTTATTCCTCCCAAAATTCCTCATTAAGTTTATAA 32787 37 100.0 35 ..................................... TAATGTTTTAGTAATTATATCTTGTTCCATACTTA 32859 37 100.0 37 ..................................... TTTGTAAAAATTCTTCTTTTAACATTTTACTGCCTCT 32933 37 100.0 36 ..................................... TCCCTTACGGATATTATTTAGTTCCTTTCTTTCTTT 33006 37 100.0 36 ..................................... ATTTGTGGGCTGTTATATCCCCTGCAATCTATATAG 33079 37 100.0 36 ..................................... TCCAAGAGCTTTATTTGTCCTACTGAATGTGTTAAC 33152 37 100.0 34 ..................................... AATTTTAAAATTTAAATCCATTTTATCACCTTAA 33223 37 100.0 35 ..................................... TAGGTTCTTCGTCTAGATACTTTTTGCTTAAATAA 33295 37 100.0 36 ..................................... AAGTCTATCTGTTTTTTATAGACTTTTTTTCTAGTA 33368 37 100.0 35 ..................................... CGATATCTATTACTCTGGTGATGGAGTAGTGGGTT 33440 37 100.0 38 ..................................... TTTTATTGATTTGAAATTTTGAAACATTTTTTCACCAT 33515 37 100.0 34 ..................................... AGATATCTTGTGTTAAGTCTGGGCCTACTTCGTA 33586 37 100.0 38 ..................................... GTATCATATGCTATTATAGCATCTGATCTGCTTTTTCT 33661 37 100.0 34 ..................................... ATATTGTCACGAACTTTGATGCTTTTGTATTTTT 33732 37 100.0 35 ..................................... TACATACTTGGTCATTCTTATGGATTTAAAATCTT 33804 37 100.0 34 ..................................... CGGCGTCGCTTATTTCGTTATCTAAGTATTTTTG 33875 37 100.0 36 ..................................... TGTTTAAAAACTATAATTTTGAACATTGTAGGACCT 33948 37 100.0 36 ..................................... TTGTCAAATGACTCATTTATTTTTTCTTTTGAGTCT 34021 37 100.0 34 ..................................... GAGGTTTTTAAACCTTTCCGTTCTTTATTTTTGT 34092 37 100.0 36 ..................................... TTTGCACCCTACAATGTCCTTGAATACACTCTGGGC 34165 37 100.0 35 ..................................... ACTTTAATAGCTATTTAAAAGCTCAATAATCCGTA 34237 37 100.0 35 ..................................... AAAACTGATTTCGATAACTCCTAATCCTTCTATGT 34309 37 100.0 35 ..................................... AAAAAAGTGGATTCGGGATCCTACAAGCACACTTT 34381 37 100.0 35 ..................................... TCATCTGTTTTTAACAGATGATACTTATTTATTAT 34453 37 100.0 34 ..................................... CTGTGGAAGTTGAGCCTTTTTGCGACCCAGAGTT 34524 37 100.0 35 ..................................... TTGACAGTTTATATCAGTTAAAGGCATACTACACT 34596 37 100.0 33 ..................................... ATAAGTATTAATATTATCCCTTTTAACGGTATT 34666 37 100.0 35 ..................................... GTAATTCGTACATTTTATTCACCTATTAATTTTTG 34738 37 100.0 35 ..................................... CATCGAAGTCTAATTCTTCGAGAGTGTCGAGATAG 34810 37 100.0 36 ..................................... TTATCGTGTTTTAAATTAAAGTCCTCAAGTTGTCCG 34883 37 100.0 35 ..................................... TTAAAATCAACAATTCTTAAAAAAACCACTTCTAA 34955 37 100.0 36 ..................................... TTGTAATACATTTAATAATGTTTTCTTCGTCTATAA 35028 37 100.0 35 ..................................... TTAATTAATTCGTTATAAGCTTGTCCACTTGATTT 35100 37 100.0 37 ..................................... TTGCCCTTCAAATTCTATAAAGTTCGCATTTGCTAAT 35174 37 100.0 36 ..................................... AATATCTATTACATCAGTACTAATAAATTGTTTTAT 35247 37 100.0 36 ..................................... GCTTGTTGCCGTTTTTGTTGCCGTTTTTGTTTCTGA 35320 37 94.6 37 ..........T.......T.................. GCATTAAATGTTGCAAATAACTCTGGCATTTGCTTAT 35394 37 100.0 35 ..................................... TGCAGATTTTACTCTGCTTAATTTGTTGCTCATAT 35466 37 100.0 35 ..................................... TATTCTACCATTCTTGGTATTTGTTTTTCGTTGTA 35538 37 94.6 36 ..........T.......T.................. TATTGGACTCTTATATCTGTGCCTGGTAGAGTACGT 35611 37 94.6 0 ..........T.......T.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 60 37 99.7 36 ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Left flank : GATGAAGGTCAAATCAGGATTCAGGATAAAGCTCGAAAATTATTAATAGCTAAAATAATGGATAAATTAAACTCTAAAATTAACTTTAATGATAAAAAAATGAGTTATGAAGATATAATTCTTTATCAGGGCAGATTACTTGGTAAATATTTAACAGGAGAAGAGAAAAATTATGTTGGATTTTCAAGAAGATGGTGAAGATTGCCTAATTTTTCTTAAAATAATATTTTTTTATAAATAATTAATACTTTTTATTTTTCAGATAAATCAGTATTTCAGCTAGTTTTCTTTAGATTACTTTTATCATGTGGTTTGGATGATGATGATCTTATATTATATTCATTATTGCTTTAATTTTAGCTAGTTTTAATAGAAAAGTATTTAAATAATTTGTGCAATAATTTATATACAGAGGTTGGGTGAAGTAAAGTTCACAGAAATTGTCACTAAATACAAGTTTTTTGCATAAAAAAGTGAAATTTTAAGAAATTTTCGCGGCT # Right flank : CATATCATTATATGTAGTAATAAATTCTCTAAATGGTATTTCAAAAAAAACTATCTACTAAAACAAGGCTTAAATGAGTTTTTATCATAATCAACTATTTCCAGTTGATTTTTATAAAGTGAATTCTAAAAAGATTATTAACAAATTGTTGCAGTGTTATATATGAATGTTGAAAGTTTGCAAATCATTTCTAAATTTATGAATGATTATGAATATGAAAAAGCTATGGAATTATGTGATGAGCTTTTAAAAAAAGATAATGAAAACAGCCATCTTTGGGCTTTAAAAGGATGCTGTTTAAATCATTTTGAAAAATATGTTGAAGCAATGGAGTGTTACAACAGATCCCTAAGCGTGGATGATGAAAACCCTTTTATCTGGTTTCATGTGGGTAAAATTTTAATGGAATATGATTTATTTGATGATGCTATGGAGTGCTTTAACAATTCATTGGAAATTAATCCTGCTGATGATATGGCACTGTATTCAAAAGGGGAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //