Array 1 112370-116289 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSE01000002.1 Bifidobacterium dentium strain BRDF 23 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 112370 36 100.0 34 .................................... TCGTCCTCTTCGGCCGACGTGTAGGGGATGGCGA 112440 36 100.0 36 .................................... GCGTTGTACCGGTCGCTCATGTTGGCCCGCTGGCTG 112512 36 100.0 34 .................................... CTCGCCATCGGCCAGGCATTCGTCAGCGGATTGC 112582 36 100.0 39 .................................... AAGGGCATCAGCCCCTACGTCGAAGCGCTGTACGACGCG 112657 36 100.0 35 .................................... TACATCACTCACCATCCTCTCGATCGGGGTTCAGG 112728 36 100.0 34 .................................... TTGCATGAGACGGACAACCACGGTTCCTCGACAA 112798 36 100.0 35 .................................... GGCGCAAATCAATACGATAGGCTCCGGCGTGGCGA 112869 36 100.0 35 .................................... CTTGACGTTTCCACCCCACAACCCTTACCCGCACC 112940 36 100.0 35 .................................... GAGTTCGCCGGATTCGACCGCACCACGAACAAGGA 113011 36 100.0 34 .................................... AGCACGATAAGCATACACAATACATCGGTGCACG 113081 36 100.0 35 .................................... GCGGCTCCCGCATGCACCTCGTACTCGCCATGGAA 113152 36 100.0 34 .................................... CAACTTATGGTGGCCGCACAATCCTCGACCAATA 113222 36 100.0 37 .................................... CCGTCAGAATCATCGGGGAACAGTAGCGCCCATGCGG 113295 36 100.0 35 .................................... TGGTACCAACCGTCTCCTGATAGTCATCGATTCGA 113366 36 100.0 35 .................................... TCCAGATTTTCATACTCTCCGGCATGTCCATATAC 113437 36 100.0 34 .................................... GTTTCGGATACCGTGGTCTTGAAGCCGTTCAGAC 113507 36 100.0 35 .................................... CAGAAGAACGACCCTGCGGTGAAGGCGAATCGTGC 113578 36 100.0 37 .................................... GCGAGCCAACATTCGTATCAACGGCGCCTATGCGGGC 113651 36 100.0 38 .................................... GAGGCCATCAAGGACAATCCGGGCTTCATCTTCGCCGA 113725 36 100.0 38 .................................... TCCACCGAACGGCAGGAAGCAATCTGGAAAATCTACGG 113799 36 100.0 36 .................................... GAGGAAGGCGAACATGCGGAGTGGAATCCATACGAG 113871 36 100.0 35 .................................... GCGGATAAACCGTCTCCCGCATTGAATGCGATGCC 113942 36 100.0 35 .................................... ACTGGGATGTGTATTCCGCGGAGCAAAGGATGAAG 114013 36 100.0 36 .................................... CCGACGGCAGCGGATACGTCGAACCGGACAACGCAC 114085 36 100.0 36 .................................... ACCGGCAACCTGTCGAGCAATCTCGTGGCGCGCGGG 114157 36 100.0 36 .................................... TCGTACGGGCACACCATCTTCGACGACGAAAGCCTC 114229 36 100.0 35 .................................... AGGCTTGGAGGCCTGCCATGAGCCTGCTTGACGAA 114300 36 100.0 37 .................................... GCCGCATCATCTCAGGCCACCAGATTGGCGAGGGTAG 114373 36 100.0 36 .................................... GACGTCGCGGCCTGCTTGGGCGCTATCATGAATGCG 114445 36 100.0 36 .................................... GAGAAGCGGGTCACGCCGTCGGCGAGGGTGATGGTG 114517 36 100.0 41 .................................... TCTGCAAGTACATGCCACACCACGCCGAGATCGGCGGAACC 114594 36 100.0 35 .................................... GAGGGTGAGAAGATCGCCAAGGCTTAGGTAGCCGC 114665 36 100.0 35 .................................... CCACATGGTCCATGCCGCGCAGTGCGCGCGAGACG 114736 36 100.0 36 .................................... ACGTTCGGGGGGCTCCCGTATGCCATTTGCGTGCCA 114808 36 100.0 38 .................................... AATTCAAACCGGCAAGTCCGAAAATCCTGAACGTGTAT 114882 36 100.0 36 .................................... TTCAGCAAGTTCGCGAACAAGGGCATTCCTTTCATG 114954 36 100.0 35 .................................... TCGAACATCGAACAGTCCTGGATCGAGTTCGCCGA 115025 36 100.0 39 .................................... GATACCAGACCCACACCACGACACACGCGAAAACACCAC 115100 36 100.0 34 .................................... ATGTGGCTGGGAAGTAAAGGCCTGAAGATCCTTA 115170 36 100.0 37 .................................... GTCCGCCCGCAGTTCGTCCGGCAGATGCGGTTTCGGG 115243 36 100.0 36 .................................... AAGAAAAACGGCTGGAACTCCGCATGCCGGTAGCCG 115315 36 100.0 36 .................................... AAGGAAATCGCAGAAGAAACCGGCACCGGCATCGAA 115387 36 100.0 36 .................................... GATACGATTCGTGCCGCCGATGGAAAGATTGTTGAA 115459 36 100.0 35 .................................... TGCTGATGACAGTAGGTAAGATTCACCCGCATTCC 115530 36 100.0 38 .................................... CTGGCGCAGACCGGCAAGGACGCCGAGAAACATTTCAA 115604 36 100.0 35 .................................... AAGGACTAGGCATGAAGGACGTGCTTGACCCTCAG 115675 36 100.0 39 .................................... TGCGTCCTGTGCGAACCATGCGGCCTTTTTTAGGTCTTC 115750 36 100.0 39 .................................... TGATCGGCACATGCCCACACTGCGCACGCCAGTTGCAAG 115825 36 100.0 35 .................................... GTGAAATATGTGTGGCGACATTACGTCACCCGCGA 115896 36 100.0 37 .................................... ACGCCGGAACAGTTCATGAAAGACAATGGCATCTCTC 115969 36 100.0 38 .................................... CGGCCCGTCTTCAATGACACCGTGCGGACAGGGATCTA 116043 36 94.4 35 ........................A..........C AAACTGCATACCAGCTGCATATGAAGTGCGTATAG 116114 36 80.6 103 ....T..GA..A.....T.....CT........... ACGTATTTCCTGTTCATGGGCACCCTGAACTAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 116253 36 83.3 0 ...........T.GT........CT.........A. | C [116255] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 54 36 99.2 37 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : ACGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGAGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCATCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 68350-68061 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSE01000001.1 Bifidobacterium dentium strain BRDF 23 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 68349 24 100.0 29 ........................ GTTCAAACCCTTCCCAGCGTCCCAATCCA 68296 24 83.3 29 ........T....AG....C.... ATTCAAACCCTATTCAGCGTCCCAATCCA 68243 24 100.0 29 ........................ GCCTAAACGCACCTCAAAGGGATAAAACC 68190 24 83.3 29 .............AG...T.C... GCTGAAACCCCATTCAGCATCCCAATCCA 68137 24 100.0 29 ........................ TATTGAAGCTCTTCTGGAGTCCTGATTCG 68084 24 83.3 0 C............AG....C.... | ========== ====== ====== ====== ======================== ============================= ================== 6 24 91.6 29 TCCAGCCACTGGAGAAATCATCCC # Left flank : CCGCGGACACCCAGGAGGACTGGCAGTCCGAGGCCGCGGAAAGCACGGAAGAGACCACCGACAACGACGCTGTTGCCGAGTCCGCCGAAGATGACGACGATCTTGACATCCCGATGGACCGCGTCGAAGCGGTGCTGAACGCCACCGTCGACAAGGACTCACTGACTCCTCAGATGCAGCGCATGATGAATCGTCAGGCTGAGAACACCCGCCGTGTCGAAGAGACCATCAAGGGCACCAAGTCCAACCCGCGTTGGTTCGTGCCACTGTTCTGCGCACTGATGATCATCGGTCTGATCTGGGCCGTGACCTACTACCTGAGCGGTAGTTATCCGATTCCGAACATCGGCGCATGGAATCTGGCCATCGCCGTTGCCATTATCATGGTCGGATTCCTTATGACCATGTGGTGGCGCTGATCATATCCGCCACGAGAGGGCGTCTGGGCGAGTCCAGACGCCCTTTTGTTATGTCCGGTCACCCTTAGCCGTCCCAAAACC # Right flank : ACTACGCGATCACACCTTAACGGTACGTAGCAGAATATGCCCACCGCCTTGGATGGTGGTGCCGAACAAGTAGGTATCGCCTCCATCGGCAAGCTTGAGCTTCTTACGCAACTGCGGCGCTGTGAGCGGAAAATTGCGTACGGCGACATTCGCCCTCCCGACCCCGCTCAGCAACCTCCTCACATCCTTCTTGCCCATGCCTCCAACCGCTTCGATGGCAAACCCGCGCCCTGGAAAATCCGTCACGGGCTCAGCGGCCACAAACAGGTGACTATTCGGTCCGATCTGCGTCACACCATACCGTTCCTCCAGCAGGTCGAAACAGCCGGCTTTCATAATCGATGCATTCGGCTCATACAGATATTCCATCTCCGGCAATGGCGCCGTGCCGATGTGCAACCCACGCGCATACACCGCGGAATCGTAATCAATCCGCTGACCGTCGTTCACGCAATACACATGTGGCGCACGTACGTCATCCGTCGGATGCCTCGTTTCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCACTGGAGAAATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //