Array 1 36707-38992 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPS01000032.1 Bifidobacterium longum subsp. longum strain MCC10009 contig0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 36707 36 100.0 29 .................................... TAGCTATATAATATATATATGCGCACTGG 36772 36 100.0 28 .................................... TTCGCATACTTGATGCAGTAATCAACGT 36836 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 36900 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 36964 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 37029 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 37093 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 37157 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 37221 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 37286 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 37351 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 37415 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 37479 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 37544 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 37608 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 37672 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 37736 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 37800 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 37864 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 37928 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 37993 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 38057 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 38121 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 38185 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 38250 36 100.0 28 .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 38314 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 38379 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 38443 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 38508 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 38572 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 38636 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 38701 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 38765 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 38829 36 100.0 28 .................................... TCGTCGATGTGCTCCAAGAGGTTTGGTG 38893 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATAATCA 38957 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 36 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGCGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 192501-192882 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPS01000034.1 Bifidobacterium longum subsp. longum strain MCC10009 contig0034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================================================================================================================== ================== 192501 26 81.5 138 C....G...-...........G..C.. AGTACGCTCTTCGCGGTCAGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCATAGCGCGGGTTGCGGTCCGAACCACGGCCACGGCCGCCACGGAAACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCGATC G,C [192503,192505] 192667 27 100.0 54 ........................... ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC 192748 27 100.0 33 ........................... ATCATCGCGATCATCGCGATCGAAGTCACGGTC 192808 27 81.5 21 AT.G..G.................G.. GTCGTAATCATCCTCGAAGTC 192856 27 81.5 0 AT.G..G.................G.. | ========== ====== ====== ====== =========================== ========================================================================================================================================== ================== 5 27 88.9 62 GGCAGAACGACGGCGACGCGGACGATC # Left flank : GGCCATGACTCGGACATGGCGCGGCACGGCAAGCGGATTTTGCTGTTGGGCATAACAACAGACGAGAGAATAGATCCGGTCGTGAGCAACAGGATAGGTGCCATGCGGTGCCGTGTACAAACTGTTGTCAGTTGTCAACGCTTTTTAGCGTGGCTCCAATCATCTTAATGGCTGTTTTCCGCCATTCTTGATGCATGAGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGCCCTATTCAACATCGAAATATGTAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATTAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGGGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGT # Right flank : CGTCACGATCGTCGAAGTCACGGTCATCGCGATCGGAGCGACGGCCACGGCCGCCACGGCGATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGTCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCACCTTCCTTGAGCACGTCTTCGACGGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCGATTTCAGCGCCGGTGTCTTCC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.65, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGAACGACGGCGACGCGGACGATC # Alternate repeat : GAGCGACGGCGACGCGGACGGTCGTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //