Array 1 4-460 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDN01000284.1 Serratia marcescens strain KS65 contig284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 32 ............................. AGCTTAAACCGGATGCCCGCACTTCACTGCAA 65 29 100.0 32 ............................. TGGGCATGGAGCAATAACCCGGCGTGGATTTG 126 29 100.0 32 ............................. TTCATGACCCAAATGCGCGGGCTGGCGAATCT 187 29 96.6 32 ............................T GGAGACAGACGCAGAGCTACGCCAGCGTCAGG 248 29 100.0 33 ............................. ACAGCTTACCGGTCACATCAGCGTTTTTGCGGC 310 29 100.0 32 ............................. TGTCTCGCACCGTTTCCACTATTACCCCAGCA 371 29 100.0 32 ............................. CTATTACCGGCCAGACATCAACAATAATTTGG 432 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGG # Right flank : GGCGCCGTCCGGGATAATCGGTTCTACGTTGAAATCTCGCTCCAGATTCTCCGGCTCAAGCGCCAGCGTGTGCACCAGCGAGCCGAACGTCAGCGCGTCGCTGCGTTCCCGGCCGATCGTTTTGATGACGTGGCGCCCGTGGTAATACATCAGGCTGATACGCGCGTCCTTCACCTGTGTGCTGCTGATGCCGTTCGCAGCGTGATAGGCTGTGTTTGAAATATCAGCGTAACGGCCTGGCTCGAAATACGCCTGCGCGCAATCTGCTGCAGGCTCACTTTCTTGTCGCTGCGCTAATTCCGCTTTTTCACCGTCGTTTGAGGCGTCATTGCATGTCTGCTCTGGTAACGGCTGCTGCTCGGCATCTTTGCTCGGCTCGCTATCAACCTGCACTGTAGCCAGCGGGGAGGCTTCGAAAAGACTGGACACATCGAAGCGGCCACCGCCTAAACTGACAAGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-824 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDN01000129.1 Serratia marcescens strain KS65 contig129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 64 29 100.0 32 ............................. AACTGGCCGCATTTGGGTTAACGCCCGAGGAC 125 29 100.0 32 ............................. CTGTAGAAGTGGTTTAATAGGCTGCGGCTATG 186 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 247 29 100.0 32 ............................. TTGAAGTAACTTATAGTGATGAGGGTGACCAC 308 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 369 29 100.0 32 ............................. TTAACGACGATCTGGCCGGAGTGGTAAACCGA 430 29 100.0 32 ............................. TGTTCTTCGTGCCGATGGCATACAACGGGCCG 491 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 552 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 613 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 674 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 735 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 796 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAG # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8789-8515 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDN01000106.1 Serratia marcescens strain KS65 contig106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8788 29 100.0 33 ............................. CGCCACGCCCGGCTTGCCGTAGATGCGTATTGC 8726 29 100.0 32 ............................. ATACTATAATCAGCTGGGTCAAGCCCTTTCCC 8665 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 8604 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 8543 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : CAGAGCTTCACTGCCGCACAGGCAGTTCGAATATGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGTA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //