Array 1 947-622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEO01000017.1 Staphylococcus epidermidis strain 1056_SEPI 101_12667_330629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 946 36 100.0 37 .................................... GATAATCTGTCTAGTAAAGATATATATGCAGCTTTTA 873 36 100.0 36 .................................... TCCAGTTTCTTGTATTTCTTTGCTAAATAAACCACC 801 36 100.0 35 .................................... GATAAATATCTATAATTAACAATTTTCTTATTGAA 730 36 100.0 37 .................................... TCCAACTTACTATTTCCTTCTTGAAAAGTAAACTTCA 657 36 88.9 0 AT..........C....G.................. | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Left flank : TTTTTTAGTAAAACCACTAATAAGGGGACAGAAAGCTTATGAACACAAAAATACTTGAGATTGGCTTCTGTCCTTTAGATTTTACAATCGATTTATAGACCAAATAAAATTTAACTATTTTGTTTATTCAAATTCAGAAGAGCTATCCTCGTGTGATGTGACTGATCTTTCTAAACCGTATAGAAATTTTTCAGATTATTGTTAATAAGCAATCTCTTAAAAAATAAAAATTAAGGAAATTTATATTACTATTATCTAGGTACTAATTTTATCTTTTCTTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTTTATTAAGTTATACACACGATTAATTATTAGCGTGTTAAATGTAGTATACTGTTAATATAAGAAAAGTCATCATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTGTCGTTAGTTGTCACATTTTTTGACAGCCAAAATAATAATTGAACCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : CTCATCTTGGTGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCCTCGTAGAATAGAGAACAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTTTTGCAATTAATCAACATTCAATTTTTAAATAAACAGAAACAAAAATAACTTTCATACAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAGTTTGATGCAGTGTGGTCCAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAATAGTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAGCAAGATTATCATTTAGAAAATGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 11607-11355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEO01000043.1 Staphylococcus epidermidis strain 1056_SEPI 238_45779_1243456, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 11606 36 91.7 37 .....C............CG................ AGATTAAAACTATCCAAACCCACACCGGCACATCTAA 11533 36 100.0 36 .................................... TCATTTCTATCCATTCAATATAAGTTTCACGTTGAA 11461 35 97.2 36 .........-.......................... TCAATAAGCCACGAATTAATGTATACGATATCTCTA 11390 36 88.9 0 .............T.....A.............T.T | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 94.4 37 ATTCGATAACCACCCCGCATAAAAGGGGACGAGAAC # Left flank : GTACGTCTTAATATTCAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGATGTTAAACGTTTTTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGACAAAGAAACATTAGATTTTTTAATGAAAAATGTTAATATTGTCGACTACAAATTGAAAAGTACACGTTTTAACTTAGAAAAAGTTAAAATTCCTTCGTTTACAGGAGAAATGGTGTTTAAAATTAAAGGCCCCTTACCTTTTTTACAGTTAACTCATTTTTTATTAAAGTTTGGCGAATTTTCAGGTTCAGGTATGAAAACAAGCTTAGGTATGGGAAAATATAGTATAATTTAATTAAGACATAGTTAAAATTTAGTTGTCAAAAAATGTGACATTTAGCGTCTATAGTACAGGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTCGAACTATTGATATGATTGGTTTTAAAGAACTGTC # Right flank : TTTTAGCGTAGTAGCAAATATTAAAAAATATATTTGATTTGATAAACTATCATACGTATCTCAATATTATCAGGTATTCCTAGTTCTCAAGACATGAGTTTAGGAAGATGAGTATTTTTAAGATTTTGTAATTTTTTATTAAATATATTTCTGGAAAGATTTTTTTATAACAGTTGTACCATTTTTATAATTGATATTGTTTAGAATATAAAAGTTACTTTACTTGAAGTATCTGGAAGATGTGTAGGTAAATTGTTTAAATAATAACTTTTAGATATTTCATTGGGTAATATCTAAATATTATAATAAGTATTAAATTACTTTCCGAAACATGAGGTAATATATGAAGATTATAAAAATTTCACACGGGAGCTATGTTGGCTGTTAGTCTATTTTAAGTGAAAGATGTCCTCAATTTTAGATAAGGTGTAAAGAAACGGGGATTAAATGTATTATCAAAAATTGGCTAATTGATGATATTTAAAAATGAGGGGATAGAA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACCACCCCGCATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 20719-20328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEO01000043.1 Staphylococcus epidermidis strain 1056_SEPI 238_45779_1243456, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 20718 36 100.0 35 .................................... GTTGAAGTAAATTAAATAGTTGCAACATTTCCGTA 20647 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 20574 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 20504 36 100.0 35 .................................... TTAACTTCATTTTCACGACCTACTAATGGACCTTG 20433 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 20362 35 88.9 0 ............................G.-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 97.7 35 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : GTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,15] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //