Array 1 12810-10950 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLW01000003.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N50441 N50441_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12809 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 12748 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 12687 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 12626 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 12565 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 12504 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 12443 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 12382 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 12321 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 12260 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 12199 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 12138 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 12077 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 12016 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 11955 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 11894 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 11833 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 11772 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 11711 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 11650 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 11589 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 11528 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 11467 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 11406 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 11345 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 11284 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 11223 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 11162 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 11101 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 11040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 10979 29 96.6 0 A............................ | A [10952] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30083-29078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLW01000003.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N50441 N50441_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30082 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 30021 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 29960 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 29899 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 29838 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 29777 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 29716 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 29655 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 29594 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 29533 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 29472 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 29411 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 29350 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 29289 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 29228 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 29166 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 29105 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //