Array 1 28084-28666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLQ010000616.1 Streptomyces halstedii strain SID11342 contig-5000030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28084 29 93.1 32 ..............T..........C... GTCTCAGCCCTCACGACAGGGATGGGGATGGG 28145 29 96.6 32 .........................C... GCCACCGGCGGCTACCACTTGGTGCTGCGCGC 28206 29 100.0 32 ............................. TTGACGACGATGGGCAAGGCCCTGGGTAACGG 28267 29 89.7 32 ................T....G...A... GTGCCGAGGTCCATCACGATCGCCGGAAGCCT C [28272] 28329 29 89.7 32 .....T.....A........A........ GACTACATCGGTAAAACTGGCCGCCTGACCGG 28390 29 93.1 31 .....T...................C... AGAATGTGAAGACGCTGCCGTAGCCGGTGGC A [28415] 28451 29 93.1 32 ..............T......G....... GCTATGTAGGGGACGCCTCGCCGGTATGTGGC GT [28464] 28514 29 89.7 32 .......T.....G.......G....... AGCGGGATGACCAGGAAGAACAGGCCGGTGTG 28575 29 93.1 32 ..............T.........T.... GTGGCGGCGGCTCCGTCGAGCAGGACCTCGCG 28636 29 89.7 0 T...........G.............G.. | T,G [28647,28659] ========== ====== ====== ====== ============================= ================================ ================== 10 29 92.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCATGACGTACAAGTGTCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAACAGCTCCGACGTACCTCACGATTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCAGGTCCATTCGATCAGCCTAGACCGCGTCATCTGGCTGGCCGGATAAGGGCGGCGATCACGACTCGCCGCCTGAATCGCTGCGAGTGCTGATCCGAACGAAAGGCCCTAATTCTGGCTATGGGGGTTCCTGCATGGCCGGTGGTCAACGGGACAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCGCGTTGGGTCTTTTGCGTGTAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACCTGCTGGTCGCGGAGT # Right flank : CGTGTCCAGTTGCGGCAGGTGTAGTCATTGGTGCGGGGGTGTCGCCCGCAGTGTCGGCGCGCCCGCCCGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGTTCATCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGGCCCTCAGTTCGAACTTCGTTGGGGTGGAGTCCATGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGGTGACCACGGCCGGGAGTGCTGCGGCCGCCTGGTGGGTGGGTCGCTGACGGGCGACTCTGACCGCGGGTTCCCGGCCGGCCCGAATGCGCGGCCCGAGCCCGAACCCCTGCCCGGGGGCGAAGCGCATGCGCGTGAGAACTTCCCGCGTGGTGCGCGCGGCGGGCGGTGTCAGCGGGCATGTCCGGCATCCACGCCCGGTCACGCCGGACGGCCAGGCTCCGTGGTCGCGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8335-8078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLQ010000364.1 Streptomyces halstedii strain SID11342 contig-4000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8334 37 100.0 35 ..................................... GGCGCGATGTCGAGGGTCTCGCCGGTGGTGCCGGA 8262 37 97.3 36 ................................C.... GTCTTGGAGGTGTGGCCGAGACGCTCATAGGCCCTG 8189 37 100.0 38 ..................................... GGCAACTGCCAGGAGCCCTCCAACGTAAAGGCCGGCGG 8114 37 86.5 0 .....A..........................CTGC. | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 96.0 37 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AGCAGGCCGTCCTGCCAGGCGCAGCATCCCTTACCGACGTCGTGCACCAGAGCGAGGTACTCCGCGAGTTCACCAGCCCCGAAAACATCTCCGAACCTACGAGCGAGAACCGCCGATTCACGCAGGTGGTCCGTCAGTTCATGCCGCGCCCCTGAGACCGGACTACGACTATGCGCGTATAACTGCCTTGAAGACATGGAAAACCCCTCTTGCCAGCACGAACCTCCCCGATTCGCCTGGTGGGCAGAACCTACACGAGCCCACTGACAGTCAAAGGAAAAGTCAGGTACGAAAGCAAAAGGGCCTACTGATGTTGCATCATCAGTACCCACGCCTTCCATGTTCGGAGCCGACTGGAAGGCCGCCCGCAGGTTCGGAACCCCAAGCACACACGTGACACGCAGATCACACCCAAGGGAAATGTCCATAATCTCCCATTCGCCTTGGCGCTCACTAGAAACGCCCACTTGGACCTGGGGTGAATGCGCTGGTCAGCCAGC # Right flank : CAGCTCGCTGGGCACGTGGGACTGGCCACTGCCTCCGCAGCCGACGATGGCGACCTTCCTAATGGTGCTCCAGCCCAGAGAGGTTGAGGTGATCGTCGAGCCAACTCGCGGGCCGTGCTGTGGCTGGCCTCTCTCCTGCCTGTTCAGTTCGGCGCTCAGAGAGCCCTCTACCGACGATGAGCGTCGCCACGCGCCCTGGCTCCCCTGGTGCTCGACGCCGTGCAGGGTGGGCTGCTCTGGGCTGCCCAAGCGCTACAGCTCAAACCTGTGCACCAGTCCCTTCCTGCTGAGGGCGGGAGCGTCCGACGCTGGTACGGATCACCTCGTCGCTGACCCGCAGCGCCTCTGTCATCCTTGCGAGCCAGGGCTCGGGGAGGCTGCTGCTCCCCAGCGCGCATGCACGGACAAGCCGTTGGGCCGCCTCGACCTGGCGCGGCTCGGCGAGACTGGTGAACCGGTGGTCAGCCAGACATTCACGGGCGGCGTAGCCGTCGGTCGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16150-16771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLQ010000364.1 Streptomyces halstedii strain SID11342 contig-4000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 16150 37 100.0 36 ..................................... CGCATGATCTGGCCGCCGATGTCGCCGAGCGCGGCT 16223 37 100.0 37 ..................................... CGCATCACTGCCCGCGACGGGCAGCCGGACCCGGACG 16297 37 100.0 36 ..................................... TTCAGAAGAGCTTCCTGGGCGGGTGTCATGTCGGTG 16370 37 100.0 35 ..................................... TGCAGGGCGAGGCTGGCGACCCGGGCCCGCTCGTA 16442 37 100.0 36 ..................................... CAGCAGTCACTGACCGCAGAAGAAATCGGGAAGGTC 16515 37 100.0 36 ..................................... GTCTTCGCAGTCCACCCTCCACAGAAGGGCATATGC 16588 37 100.0 37 ..................................... CGCGTCAGCCTCGACAGTGAGCACTCCCGCCACGGAG 16662 36 97.3 37 ................-.................... CTGACGGGCGGCCTCGCCACCATCTGCGTCGGCGGCC 16735 37 83.8 0 ................A.....C........G.GCG. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 97.9 36 GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CGCCGACGAACTCGCCACAGCACTCACCACGACCCGCAACGCCGAATCACTCGACATCACCATGGGTATCGAAGGCAACGCCGCCCGCGCCTATTTCACCGCCCTCGCCCATGCACTCCGCCCCTCCGACGGCATCCCGCCCTTCACCCACCGCAACCGCCGACCACCCACAGACCCCGTCAACGCCCTGCTCTCCTTCACCTACGGACTACTCAGGAGCCTCGTTCACGGAGCCGCCGAACAAGTCGGCCTCGACCCGCACATCGGCTACCTCCACCTCTACCGACTGCCCTCCGCAGGCCTCGCCAACGTACACACCCTCGGTACGGCCCAGATCGAAGCACACCGTCAGGACTTGGTGCTCTGACTGCTTCGGAACCTCAAGCACACACGCGACACGCAGACCGCACCGAAGTGAAATGTCCATATTCGACGCTTCGGTCACCCGCCGGCCTTCCCAGCAACAGTTACGGATACGCTGTTCCCGCTGATCAAGCAGC # Right flank : CTGCCCCTTTGGTGGGCCCGCGCCCACGGTGTCCGGCGATGATCTCGGCCGCACTCTTCGCGTCCTCCCAGCACACGCTTCGGCCGCAGATGAAACGGCTGTATCACGGTCCAGGAAGCAGGAGGCTTGGGCTTCGCGTCCGGCCTTACCACTGCACTCAACCTTCGATGCGATAAGTCACCGTGCGGCGATCCGTACCGGCTACGGGTGAAGTGCTCCTGGGAGTGCTTACGCAGGGAAAGGATCGGCTGCAGGAGGCACTGTGGAAGCCCCACAACCCGCATGGGGCCTCTCGTTGACGTCATCGGTGCCCCCTCCGGTGGCCAGCCGGTGGCCGGACGCCTTCGGACGACGTAACACCAGCGAGGACAGACCAACCAGCCGCACGTGCTCTGATCAGGCAGAACGTCACTCGGCAGCACGACCGGGCACCAGGCAACACGAACCCTCACGGTCTCGTAATGCGTAGGTCCGGGGTCCGAGTCGCCAGGGACTTTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //