Array 1 211635-209592 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOD01000004.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0215 NODE_4_length_429125_cov_25.081240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211634 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 211573 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 211512 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 211451 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 211390 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 211329 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 211268 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 211207 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 211146 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 211085 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 211024 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 210963 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 210902 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 210841 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 210780 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 210719 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 210658 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 210597 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 210536 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 210475 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 210414 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 210353 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 210292 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 210231 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 210170 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 210109 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 210048 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 209987 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 209926 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 209865 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 209804 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 209743 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 209682 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 209621 29 96.6 0 A............................ | A [209594] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228908-227903 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOD01000004.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0215 NODE_4_length_429125_cov_25.081240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228907 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 228846 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 228785 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 228724 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 228663 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 228602 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 228541 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 228480 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 228419 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 228358 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 228297 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 228236 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 228175 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 228114 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 228053 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 227991 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 227930 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //