Array 1 117279-116771 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPK01000004.1 Shewanella putrefaciens strain JCM 20190 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 117278 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 117218 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 117158 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 117098 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 117038 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 116978 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 116918 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 116858 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 116798 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : TCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 220224-223494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPK01000003.1 Shewanella putrefaciens strain JCM 20190 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 220224 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 220284 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 220344 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 220404 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 220464 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 220524 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 220584 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 220644 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 220704 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 220764 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 220824 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 220884 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 220944 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 221004 28 100.0 32 ............................ GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 221064 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 221124 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 221184 28 100.0 32 ............................ GCCAAGTAAAAATAAAACAGCACCAAACAAAT 221244 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 221304 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 221364 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 221424 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 221484 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 221544 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 221604 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGAGCTC 221664 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 221724 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 221784 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 221844 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 221904 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 221964 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 222024 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 222084 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 222145 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 222205 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 222265 28 96.4 32 A........................... TGCCAGCCCTGAAACCACAATAGACTATGTTG 222325 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 222385 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 222445 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 222505 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 222565 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 222625 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 222685 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 222745 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 222805 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 222865 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 222925 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 222985 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 223045 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 223105 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 223165 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 223225 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 223285 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 223345 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 223405 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 223465 28 85.7 0 ..........G...T.....T.....T. | TG [223487] ========== ====== ====== ====== ============================ ================================= ================== 55 28 98.6 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : ATAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //