Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXH010000031.1 Erwinia amylovora strain 20060013 Ea_20060013_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31644-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXH010000031.1 Erwinia amylovora strain 20060013 Ea_20060013_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31643 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31582 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31521 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31460 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31399 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31338 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31277 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31216 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31155 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31094 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31033 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30972 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30911 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30850 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30789 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30728 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30667 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30606 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30544 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30483 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30422 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30361 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30300 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTGGGTGATT 30239 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30178 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30117 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30056 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29995 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29934 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29873 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29812 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29750 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29689 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29628 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29567 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29506 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29445 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNNCCCCGCGTATGCGGGGATAAACCGGCGGCGAAGAGACCGGAGCATGGGCTGTTGAA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46370-40759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXH010000031.1 Erwinia amylovora strain 20060013 Ea_20060013_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 46369 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 46308 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 46247 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 46186 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 46125 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 46064 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 46003 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 45942 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 45881 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 45820 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 45759 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 45698 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 45637 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 45576 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 45515 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 45454 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 45393 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 45332 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 45271 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 45210 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 45149 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 45088 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 45027 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 44966 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 44905 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 44844 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 44783 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 44722 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 44661 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 44600 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 44539 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 44478 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 44417 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 44356 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 44295 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 44234 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 44173 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 44112 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 44051 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 43990 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 43929 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 43868 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 43807 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 43746 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 43685 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 43624 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 43563 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 43502 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 43441 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 43380 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 43319 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 43258 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 43197 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 43136 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 43075 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 43014 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 42953 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 42892 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 42831 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 42770 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 42709 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 42648 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 42587 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 42526 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 42465 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 42404 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 42343 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 42282 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 42221 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 42160 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 42099 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 42038 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 41977 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 41916 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 41855 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 41794 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 41733 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 41672 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 41611 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 41550 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 41489 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 41428 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 41367 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 41306 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 41214 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 41153 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41092 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 41031 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 40970 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 40909 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 40848 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 40787 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 92 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //