Array 1 599-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCB01000179.1 Desulfovibrio brasiliensis JCM 12178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 598 32 100.0 35 ................................ TTACAGAGAGGCCACCAGTGTTGCCGACCTTGCCG 531 32 100.0 34 ................................ TATTGACGAGGGAATGGTCCTCAAAAGAATATTT 465 32 100.0 35 ................................ CGGCGTGAGCACATCCGGCAGGCCAAGCGCGCGCT 398 32 100.0 34 ................................ ATGCCGTAGCGACTGCGGGCCCGATCAAATGCGT 332 32 100.0 34 ................................ CCGCCGGGTGTGGCCCTGACCGTGGCTCTCGCGA 266 32 100.0 36 ................................ GATCAGAATGCTGTGGGCGTTTTTCAGCTTTTCGTG 198 32 100.0 34 ................................ GTTTAAGTTTCCCGTCGATGCACCATTTTTGAAC 132 32 100.0 34 ................................ GGGGTCGAAACTCCGCCCGTATTTGTCCAGCGGC 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 35 GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Left flank : CCAGACAGCACCAAGCGGACGTCGCCTGCGGGCG # Right flank : CTGGGACTACGTGGGCAACGACCAGTTCGTCTACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1260-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCB01000168.1 Desulfovibrio brasiliensis JCM 12178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1259 32 100.0 35 ................................ TGTGCGGGATACGTCTCGGAGCTGAATGAGATGAT 1192 32 100.0 34 ................................ CCTCCCGCACCTCCCGCACCGCCAGAACGGGGGA 1126 32 100.0 34 ................................ ACCTTGGTGATCCACTTGATGACGATGTCCCCTT 1060 32 100.0 34 ................................ ATCGACGGTCAATCACTTCCCCCCGAACACTTTG 994 32 100.0 34 ................................ AGGAAAATCGAAAATGATTTCTCTGGGGACATAT 928 32 100.0 34 ................................ GCGTTTGGTTTCGGGGTAGCTCCTCTGCCTTCTG 862 32 100.0 34 ................................ CGCGAAATTGCCACCGGCAAACGCGAGGCAAGCG 796 32 100.0 35 ................................ AACCTGCCGCAGGCCGAGCCGAACCCGGTGCCGAC 729 32 100.0 34 ................................ GATCAGAACGTCGCGAAAAAGGTCGTTGATCGGG 663 32 100.0 36 ................................ AGTGAAACGCATGATGGAATACATAGGTAGATCCAC 595 32 100.0 33 ................................ ACTCAATCTGGCAGATTGCGGCGGTGACAAAGA 530 32 100.0 34 ................................ GTTCGCAGTTCTCCACCCCGGAACAGCGGGTGAA 464 32 100.0 35 ................................ ATGACCTGGAGGCCCGCTTTGCAGAAGAGGATCGC 397 32 100.0 33 ................................ CATGAATTCGTTCCAATCGATCATGCAGCCTCC 332 32 100.0 35 ................................ TCTGCACAAATGCGGCTTGGCATGAACGCTGTAGA 265 32 100.0 35 ................................ TGCCCGTTCGGGGCGGACGACGATACCGCAGCCAT 198 32 100.0 32 ................................ ACCACGAACAGTGCGATGGACGATAATCATCA 134 32 100.0 35 ................................ TGCCCGTTCGGGGCGGACGACGATACCGCAGCCAT 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 100.0 34 GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Left flank : TTGAAACGCTCGCCGTCGCGGCCGTACACCACAAGCACGGC # Right flank : CTTAAGCTCGAACGGGATGTCGCGGGTGACCACGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1261-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCB01000038.1 Desulfovibrio brasiliensis JCM 12178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1260 32 100.0 34 ................................ CTTCATGCATGCGGTGGTGCCGCGTCATGAGCGC 1194 32 100.0 34 ................................ TATGCACTTGTAGGAAAGTGTCTTGGGCACAAAT 1128 32 100.0 34 ................................ CCTCCTTGGATCGGATAGTCTGCCATGGCCTGTC 1062 32 100.0 34 ................................ ATCCGCATAGCTTGAGGGGTGCAATGCCCCTTTG 996 32 100.0 33 ................................ GCTGGATCATCGGGTTCTTGCTGCTTGTCGTGC 931 32 100.0 34 ................................ CCTCAAACTTTACTACGATACCTCCAGCCTCTAG 865 32 100.0 35 ................................ ACCAGACGGTCGGCACAAAGACACAGGTTCAACTC 798 32 100.0 33 ................................ TCTACGTAGTGCGGGACTCCGTTGGCATCCGCG 733 32 100.0 35 ................................ TTTTCCCAAGAAGTCGCGTTTGAAGATAAATACGT 666 32 100.0 36 ................................ ATAGCCTAACCCGTATCACCAAACTGAAAGCCCGAC 598 32 100.0 35 ................................ TCAAGATACCATGTTGCCAGTTCTTCAATGGCCAG 531 32 100.0 35 ................................ TGGGAGAAAACTCCGCTGTTTCTCTCAGCTTCGGA 464 32 100.0 34 ................................ AGGCAAATGAACGCACCACGTCTTGGGGCAGCGG 398 32 100.0 34 ................................ TTTATCACGCCGGAAGCCAAGGACATCGACGATG 332 32 100.0 34 ................................ TCTCCAATACCCTGCCGCCGAACGCCCCGTTGAG 266 32 100.0 34 ................................ AATCATTTACGATACTTATAAGAAAAGTACATTA 200 32 100.0 34 ................................ AAGGGGTGTGGCCGGTTCGACAGTTTCACCTATC 134 32 100.0 35 ................................ TGGTGAATGAGCGGTGTCCGGAATGGATATACCCA 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 100.0 34 GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Left flank : ACGGATATCCGCCGTTTTTCTGGAGGTGAGTGTGCTGGTTCTGGTCAGTTATGATGTCAGCTTTGAGGACGAGGGCGGCAAGCGTCGATTGCGGCGGATTGCAAAAGTATGTGAAAGTTATGGTCAAAGGGTGCAGTATTCGGTGTTTGAGTGCGTGGTCGATCCTGCACAGTGGGCCAAGCTCCGTCACAAGCTGCTGGATGTCATCAATCCGGACAAGGACAGCCTGCGTTTTTATTATCTTGGAAAGCATTGGCAGCGTCGCGTGGAGAGCCATGGGGCTGTCGAGACGTATGACCCGGAAAAGGATATTCTGATACTGTAGCGCGAACCCCAAGCGTTGATCGTTTTCCCGGGAGGTTCGCGTTGATGAAATTGTTCATTAATTTAGCCTAATACGAATGGCTGTTCTATGATATAGATTTTCCGTGATGATTTTCGTGTCGGTTCGCGCAGAACAAGCCCTACACCCAAGCCGGATGCGACCCGATAGCGTCACA # Right flank : CCCGAACACCCTCCATCCCTGTGAGGCGGACATGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCCGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //