Array 1 103289-101339 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCAP01000004.1 Vagococcus zengguangii strain MN-09 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103288 36 100.0 30 .................................... ATGTGCTTAATGCTGAAGCGGCTGCAATGC 103222 36 100.0 30 .................................... TCATAAAATTAGAAGAACATTGCGGTTCTA 103156 36 97.2 30 ...........A........................ ATGTGCTTAATGCAGAAGCTGCTGCAATGC 103090 36 100.0 30 .................................... TATCAAAGCTTGGAAAACACACCATTTTTC 103024 36 100.0 30 .................................... GTAAGACACGGTAGGGATAACTAACGAATA 102958 36 100.0 30 .................................... TATTTGATTGCTAACTGTTCTGTGGGATTA 102892 36 100.0 30 .................................... GAATCTTCTGTTGTTTGTTCGTCACTTTCT 102826 36 100.0 30 .................................... TAAGCTGTTTTTAGCTCGTTTACGTGTTTA 102760 36 100.0 30 .................................... TCACTTCATAACTAATTCCATCTGAACTAT 102694 36 100.0 30 .................................... CAATACTATTTGAAAAACTATTACTCTTAT 102628 36 100.0 30 .................................... AACGCATGATACTAGTTGGCACAACGCAAA 102562 36 100.0 30 .................................... AATGCTGTTCGCTACTGAGAACGCTGATTT 102496 36 100.0 30 .................................... GTGATTGCGTGTCTGCTTACTGGGGAGTTA 102430 36 100.0 30 .................................... GTTTGCTAACTTTCTTTCTCTTCTCAACCT 102364 36 100.0 30 .................................... GTATGTTAGTACGTTGCTGGTTTGCTATTG 102298 36 100.0 30 .................................... ACTTAGAAAATCGCTATAACGATCAAATAG 102232 36 100.0 30 .................................... ATTCTTCATGGATAAATGTCACGTAATCAC 102166 36 100.0 30 .................................... TTCAGCTCCAAAAAGCTTACTGTTTAACCT 102100 36 100.0 30 .................................... TACAAATTATCGAAAGTTTAGCTTGCCCAA 102034 36 100.0 30 .................................... ACTCTGCTAACTCCACCAATTCTGATAAGT 101968 36 100.0 30 .................................... CTAAAGATTCTGATATGCTTTTATCTGAAA 101902 36 100.0 30 .................................... TCAAATAGATGAAGTTACTAAAGCAATTCT 101836 36 100.0 30 .................................... CGTTACTAGAATTCGCTGAAGCTTACGAGC 101770 36 100.0 30 .................................... TTCCTTTCATCCACCCAGCTCCCAATTCGA 101704 36 100.0 30 .................................... TGAACTACGCCTCGCTGTTCGCTCGTTGTT 101638 36 100.0 30 .................................... CAAGGACCAGAGCCTAGCGAAGAAGAACGT 101572 36 100.0 30 .................................... GGCGTGGGTGCTCTTCATGATAGGCATATA 101506 36 100.0 30 .................................... TGAAAGAATATGATGGTGTATTGCAAGCTA 101440 36 100.0 30 .................................... GATTGTCAAAAAGATTAAGATTGGATATTG 101374 36 91.7 0 .................................TCG | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.6 30 GTTTTAGAGCTGTGTTGTTTTGAATGTTTCCAAAAC # Left flank : TTATCAAGAGTTAGCCGAACATTTGAATGATGATCCTGAGAAAAAATCCAATATAGAATATTATTTGAATCATATACACGATTGCCTAATAAATGATTCAATAGAATATGATTTAGATTTGATTATGGAGGAACCAGAAATACAAGATGTTTACAAGTTTTTTAAATTGAAAGTCAATTCGATGCAATCCTCAATTTTTGAAACTACACTAGAAATAATAGATTTGTATAAGAAGTTGAAAAAGAAAAAACTGTTAGTTTTAATTAATAGTTGTTCCTACTATAGTCAAGAAGAATTACAGGAATTAATATCTTACATTTCTTTGCAAAATAGTCCAGTCTTAATGATTGAACCACGTAGAATAGAAGGTGTAGAACAAATTGTTTTAGATAATGATTTTTATTTAACGAATTAGTAAAGAGATGGAAATGTTCAAGACTAAAATCTTGCTAGGATGAGCAGTGCGATTACGAAATTCCGTAGAAAGATTTTTCTGCGAG # Right flank : GATAAGAAAATAACGATTGAAACAAAAGATGAATTTATTCGTATGAATGCTCTTTACGCTCGGAAAATCAATAAAATTAGTAAAGGGTTAGTCTGGTTTTATTTTCTAGTTGGTTTTTTAGTAGTTCTGCATGGTTTTTATAATATCATCAGTGTTTGGGAATTTTTGACATCTATGTCTAATGTTTTGTATAGTTTGTTTTTTTGTAGGAGAAATATTAATCGGTGTTTTAATCATGTTAGCCGGCTACTATTCAGGTGTGTTAACGGCTAAGCGTTGGGTTAAAAAGCCTAATAATCAAGTGGCGTTTGAAAAGGTGACAGTGACGATTGATGATCAAGGATTTATTGTGAATAATGCGCGACATGAATTTTCGCGAATTAGTTGGCAATCAGTGGGCAATGTTTACGAGACTAAGAAATTTTTCTTATTTGAATTTACGGAACATCAAATTAGCACGCTTCCCAAACGTGTCTTAACACAGGCTGAACAAGAGGAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGTTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //