Array 1 51366-51529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQN010000005.1 Listeria newyorkensis strain FSL L7-1614 NODE_5_length_185275_cov_42.142410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 51366 32 96.9 34 ....................C........... AATCTCAAAATTTAGTCTTTACTGCTGAAAATGT 51432 32 100.0 34 ................................ AATCATGTGGCGTATCACTTAACTATTCTACCAG 51498 32 93.8 0 ...........................A.A.. | ========== ====== ====== ====== ================================ ================================== ================== 3 32 96.9 34 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTA # Left flank : TGTTATTTCTTTATTAATCGCTTTATTAATTGCCTGCTTACGCCTATTCTTTTCTTTTTCATCGGGTTTTCTCACAGTTTTATTGAGGATACTCTTATAAAATGACTCTTTTTTCTTATCAAATATAATTTCTGTTGTCTTATTTCCATCGATACCTTCATAACCCAGTTGACCTTCCTTGCTTGTCCTCTCCATTACGATAGTTCTTCCATCTACTCTCATCTTTGTGATTTTCATCTGTCTACTCAGCTCCATTTGGTTTTATAGTCATGTACCTAATGCTTCATTAATGCTGAAAATTTAATTGGTTTCTTCATGCGTGTATGAAATTTCTATTATTTATCAATATATTCATTATACAAGAAGGCACGTTGCAAGACAACATTCGCTGATGATTCATCTACAATACTAAGAATTGAATAAAGCCATAAAAACCAATAATCCAGTTCTTTGGATCACAGTTTTTATGGCTTTATTTCGAATACTTATCCACAAAAGAG # Right flank : ATTCACTTGCAACAACATAACTATACCAGATTTTTAATGGATCTGCATCTTGACAGATTACCAAAACATAATTATTTTTTCATAAATTAAGAGACAGCTCAGCAGCCATCTCTCAAAATCAACCAATTATCTTCTGCTAATAAAATACCTTCCTTCTTGAAAACACTTCATAAATCACTGTACCTCAAGTTTTTGTAAGTCAGCAACTGGTTTACTCAGCAGATTTTCAGTTAACTTGCTGCCAATGAAATCTTTACAATTACATATAATGATAAATAGCAAAATTAAAAATCTAAGTCCAGAGAAAATATTGCTAGCTCTGATTTCAACTTAGATTTTGTGTTGAATTATATCATAGGAATCTCAATATCATTTCCCTCTATACCATCCAAGAAAAAATCAGGTATATTTGGATTCGATTTTTTCAATTTAAATAGTTGTACCTTAGTCAGCACTGGGTAATATGAAATACTGCTGCGCTTGAAAACATCCATCTCAAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 30623-30395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQN010000009.1 Listeria newyorkensis strain FSL L7-1614 NODE_9_length_123363_cov_31.778612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 30622 30 100.0 36 .............................. CCGTACCAGTTCAAGGGACAGCAGGTGTTGCTAGGG 30556 30 96.7 36 ..G........................... ACAGATGACATAGCAGTAGCAAGTCCAAGTATTTGC 30490 30 100.0 36 .............................. TAAGCAGTATTTACAATAGTTTTAGTATGAACATAA 30424 30 93.3 0 .T......C..................... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GGTTTTATTTAAGTAATGTGAAATGTAAAT # Left flank : ATGGCGAAATTAGCGGACGAAGCGTTACAACAAGCGACAGAAGAAGATGTTGTGGCGTTAGTTGATAAATATACAGCCGAATAAATCAGTCAGCGGACCGACAAACGATCACCTGCGTCGTTAAAGGCTCTGTTCCGGTGCTCATGTACAAATCGTACATTCCGCTCCGGTACTCGCCTTTGCCTAGCAGCTAATCATTTGTCGGCCCGCTGACAGTTTGGCGAAGCAGAGATGTTTTGCGTATAGACACGAATGCCCGGGGATGATTCCTCGGGTTTTTCTGTGTGTGGATGTATGTGAAATGGTAAAATCTGTCGACCGTTAGTAGTGCAAAAACTACGGGGCATCGACAGATTTGGTGTAGAGACTGGTAGCAGAGGGTTTAACGAGGTTTTGAGGTGGGGAGATGTAAGGTTAGATTGGTGGAAAACATAGATTTAGTATCGGTCGACAGAATTGAGGTCTTAGGGTATGATGGGAGTAGGGCTGAAATGGTACGG # Right flank : AAGAAACATACGTGTCCTATCGATCTGAATTAGCATTGTTTTTATCTAACTAACCTAAACCCAACCGCTCCCATTTGCAATTTCTTCAAACCAGATGTAAACTTTGTCTATACGAAAAGTGAACGACTAAAGGAGGAATCTCAGATGAAGAGAATTGGTTTTGTTGGTGTTGGGGTCATGGGCGCGAGCATGATTCGGAATTTGATGAAGGCGGGTTTTGAGGTACATATTTATACGAGGACGAAATCGAAGGCGGAGGACGTGATTCAAGCGGGTGCGACTTGGTATGATACACCGCAAGCGTTGGCGCCGCATGTGGATGTGCTGATTACGATGGTCGGTTACCCTACGGATGTCGAGCAGCTTTATTTGGCGGAGGACGGCTTTTTGACGACGCTTCGTTCGGGTGCTTTTGCGATTGATATGACGACTTCTTCGCCGAATCTTGCTAAGCAAATGGCGGATGAGGGCAAGGCGGCTGGGATTGCGGTGCTTGATGC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATTTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 43597-42716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQN010000010.1 Listeria newyorkensis strain FSL L7-1614 NODE_10_length_116762_cov_25.285769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================== ================== 43596 28 100.0 38 ............................ AACATAAATGCTACAACGTTTTCCGTCATTCCATCCGG 43530 28 100.0 35 ............................ CGTTTCTATTACAGCGCCACCTAATTCCATCTGAG 43467 28 100.0 37 ............................ CAAAATAAAAAGCACCCAATTAAAATGGATGCTTTGG 43402 28 100.0 36 ............................ CTATTATTACAAATTACGTGGAGGGAAAACTTTTGT 43338 28 100.0 38 ............................ TCTTCACGTACTCTTAAATAATTTTTTGTCTTTTCTGT 43272 28 100.0 38 ............................ ACTGGAAGGGAGTAAGCTATGGCACTTTGGAAAAAAGT 43206 28 96.4 39 ...........C................ GCATCAAGAAGTCGAGAATCACGATAGGCACATCAAAGT 43139 28 96.4 37 ........C................... GACACAGGCGCGCTGACATCATGGGCAGGACCAGGGT 43074 28 100.0 36 ............................ TAGACCAGGCGCATTTCCATTCTGACCACACTTGTG 43010 28 100.0 36 ............................ ACTGCAAGGCCCATCGAAACAAAGGCTCCTAAACTG 42946 28 100.0 37 ............................ TATTTAATCATGAACTACGGTTCTCCAGATAAAGAAG 42881 28 85.7 110 .....................C..TTT. ATCCAACCAATACGAGAACTAAATACTTCAACCCGAAAATCTTCTGAATAAATCTACCCAATCCACATTCACCCAGCCAATCCACGCCTCAAAAAAATCTTTTTGTTGCG 42743 28 71.4 0 ....CC..GC...T....T...C.G... | ========== ====== ====== ====== ============================ ============================================================================================================== ================== 13 28 96.1 43 TTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TCCACGAAGTCCCAGGCTCCGAGAAAATATGGGACGCCGACATGGTGCTCATCGCGATTGGTTTCGCCGGCGCCACGCCATCCGTTTTTGAAGATTTCAAGGTAGGTAAAACAAAACGCCACACGATTGAAGCCGCGAAAGGTTTTTATCGTACTGACGTAGAAGGAATCTTCGCATGCGGTGACGCAAGATACGGCCAAAGCCTAGTCGTGACAGCAATTAACGAAGGACGCGAAGCCGCACGAGAAGTCGATTTCTACCTTATGGGCGAGACGTTTCTACCATAATAACCAAAGAAGGCTCAAAAATCTGTCGATGCCCAGTAGCGCAAAAACTACAGGACATCGACAGATTTTCTTTATTAACTGGTATGACAGGGGTTAGGCGAGTTTTACGACAAATGAAAGCAACGCCAGACTAGCAAAAAAGGCAATTTTGCTATCGGTCGACAGAAATAGGCTCATGAGGTATGATGGGAGTAGGGCTAAAATAGCACGGGG # Right flank : AAGGAAGCTCTGCAACAACTAGCCAAGCTTTCGCGCATGTGCAATAAAAAATGCAATCATACATAAAGGTGGGATCGATATGAAAAAAGGAAAAACAGTATGAACAGATCTGTTTACAATTATGATATATAAAGTAGTACTATTCTTTCTGGGAATCATTTCGTGCATCATTTATGTCTTTTCGAAAAAGAAAGATTGATCGAAATAAACTGTCCAATCTGCTGGTGTGCAGGTAACCGCGAAGTTACTTGTGCCACGGCGGATTTTTTTATGCCTACTAATCGTTTAAAATTGACTTGGAGCCCACTTCAGGGTTTAGACTTTACCTAGGAAGCAAAAAAGTGCAAAACTTGGAGGTGTACAAAATTACGGCATCCACAGACTTTCCGGCAGAAAATCAATAATGGGAGGAATTGCAAATGTCTATTAGTAAAACGGCACAAGGCAACCACGATCAATTATTTCCAAATCACCAATCAACGTTAAAAGAAATGGACCCT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //