Array 1 1684126-1689168 **** Predicted by CRISPRDetect 2.4 *** >NC_008554.1 Syntrophobacter fumaroxidans MPOB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1684126 36 100.0 35 .................................... TCTTTCGCGTTCAGTCTCTGTACTTTCATCGTCAG 1684197 36 100.0 35 .................................... TCGCCTTCTTCCTGGCCGCTTCCCTCAGTCTCTTC 1684268 36 100.0 38 .................................... CGTCGCCTTCTTCCTGGCCGCTTCCCTCAGTCTCTTCA 1684342 36 100.0 35 .................................... TGCGTACTACTGATTCATGTTCCAGAAAAAAAATT 1684413 36 100.0 38 .................................... CTTCATCCGGTAATCTGACCATCAACCCTTTCATCTTG 1684487 36 100.0 36 .................................... GCCTTTCCCCGAAAAAACCGTCGCGTTCCATTTTTC 1684559 36 100.0 36 .................................... ATGGTTCCTTCTCCTTCTTGGTTGTGCCCCTTTCGG 1684631 36 100.0 37 .................................... CCTGCCACTCCTCGACCTCTGCCTCCAGCTTCATACA 1684704 36 100.0 36 .................................... TTGGATGTATGCCGCGCTATTCTCCAACGTCTGTGG 1684776 36 100.0 36 .................................... CTTGGTTGTGCCCCTTTCGGGGCTCTGTAGTCATCG 1684848 36 100.0 36 .................................... TCAACCCAGGAAACCACTATCCCGGCTGGATTTTCC 1684920 36 100.0 36 .................................... CGGTCATGGCTCGTTCGTTTGCTCCGATTTCGTTGA 1684992 36 100.0 38 .................................... TTGGGTTGTGTGCCTTTCTCCGAAAAATCCGTCGCGTT 1685066 36 100.0 35 .................................... TTTTCTTCTCCTTTGGTTGTGCCCCTTCCCGGGGC 1685137 36 100.0 36 .................................... GTCTCAAGCCGATCGGGGCTCTGTTGTCATCGCCTC 1685209 36 100.0 35 .................................... GGGATTTCCCGTCCCATCCGAGGCGCTTGGCCTCG 1685280 36 100.0 37 .................................... CACTACGACCTCACCAGTTGTGAGTGTCACAACTGGT 1685353 36 100.0 37 .................................... ATGTCCCGGTCGAGCATCTCGATGCTCTCCGGGTACT 1685426 36 100.0 36 .................................... TCCTTTCCATAAAATCTGTCCAAAATCTCGTCCATG 1685498 36 100.0 37 .................................... TCCCTTCTCATCGGAGACCCCTTTCTGCCCCTTTCGG 1685571 36 100.0 37 .................................... CATTGCTGACGGGCAGGGGGAAATCAGGAGAGGTTGA 1685644 36 100.0 37 .................................... TCATCGCGTCACCCTGGAATCCGAGGTCAACCCGGTA 1685717 36 100.0 35 .................................... TTTCGCCTAGCCCGCCTCGGGTGCCTCCGGGGCGT 1685788 36 100.0 36 .................................... CACATGGCGGCTCAAGGCATACGATATCTGGACCGG 1685860 36 100.0 37 .................................... TGCGTTTGCTGGTCGCTTGACGAATTGCAGCGAGTAC 1685933 36 100.0 35 .................................... ACTCATGGTCTCTCCTTTCGGTTGTGCCCATCACT 1686004 36 100.0 37 .................................... TAGGGGTGATTTTTGGCATTATTTCCTCCCTCCTGCA 1686077 36 100.0 37 .................................... AGGCGTCCATGAGCAACTCTGCTCCGGCGTGCTTCGA 1686150 36 100.0 41 .................................... TGTTGCCCCGCTCCCACCCGAGACGGGATGTCCCGTCCCAT 1686227 36 100.0 36 .................................... TGCAATCACATGTCTGGCACTCGGATCCCACTCTGA 1686299 36 100.0 37 .................................... AACTGGTCGGTGTATTTACTCATGGTCTCTCCTTTCG 1686372 36 100.0 36 .................................... TTGCCTCTTGGATAGTCTTTCTCATTTCCTTCAAGA 1686444 36 100.0 36 .................................... TTGACGATACGACGGACGCTATCTGCGGTTCCGTGG 1686516 36 100.0 37 .................................... ATCCGCGAATTCGGCAATCGTCTGCCAGAAGAATTCC 1686589 36 100.0 39 .................................... AACCATGCTCCGGTGGCACACCATACAGGTGTGCATTTG 1686664 36 100.0 37 .................................... ATTAATGACATCAATGAGAGCACTCAATTGATTTTCA 1686737 36 100.0 36 .................................... ATGATCTTGATAACTGCGTGTACTCAATCGAAGTGT 1686809 36 100.0 37 .................................... TTATCCGTACAAAAAACGAAATGAGACCTATTCTCCT 1686882 36 100.0 36 .................................... TTCCGTGTTCGGGGCACGCGGCGTGCCAGTGGACGA 1686954 36 100.0 37 .................................... CAGCGACGCGCCGTGTCGGCGAGCAATCTTGTCCGCC 1687027 36 100.0 36 .................................... TTGGGACACTCAACGCGCCTAGTGGTGATCGTCATG 1687099 36 100.0 36 .................................... GGATTTCCTCGATCACGTCCGTTGAGCGGTCTATGG 1687171 36 100.0 37 .................................... CATTTGTTTTCCGAAGGCGGTCTTCAATCCGCCTTCG 1687244 36 100.0 37 .................................... TTTCCGACGAGACCCAATTCTCCGGGTTAAACCGAAC 1687317 36 100.0 38 .................................... ATGCAGCATCAAATGATCTTGATAGTTGTGTGTACTCT 1687391 36 100.0 37 .................................... AAGATCGGGAACAATCCATCGGTCGACCGGCCTTGTT 1687464 36 100.0 37 .................................... ATACTGCTCCCGATCTGGTTAGCTGATCCTGGTCAGT 1687537 36 100.0 39 .................................... AGGATTTTTCCGAAGTTCGTGAGGCTCACGGCCTCGTGA 1687612 36 100.0 43 .................................... CCCGGCTAACCCCTCGGAAGGACATGATCTGTGTGGCTGTCCT 1687691 36 100.0 34 .................................... ACTCCTGCGGTTGCACATGGTCTATTGTCAACTG 1687761 36 100.0 37 .................................... AACCCCTCGTAGACGTACAAATCCACGAGGGCGCGAG 1687834 36 100.0 36 .................................... GTGCCCCAGATTCACCGTCGCAAACCAGTGCCGTCT 1687906 36 100.0 39 .................................... ATGACGGATTCGTTTCTGACTGTGAAAGAACGCATATTT 1687981 36 100.0 35 .................................... TCCAGGACGGATTCGTTTCTGACTGTGAAGGCTTG 1688052 36 100.0 37 .................................... TTGATTGATGTCATCAAGATCACCATCATAATTAATA 1688125 36 100.0 35 .................................... AGAGAGTCGAGCCTCGTCAAGAACCGATCGGCATC 1688196 36 100.0 36 .................................... ATAATTCCGGCCGCTCTCAGGGCGGCCATGACGTCC 1688268 36 100.0 36 .................................... TCCCAACGCTCGGCAGGGCTCGACTCGTTCGAGAGT 1688340 36 100.0 36 .................................... TTGGCCTGTTTGTGCCCCGATCCGGTGTAATAATCT 1688412 36 100.0 36 .................................... TCCATGGCATCCCGAACGCGTTCTTTATCCCAATAA 1688484 36 100.0 34 .................................... TGATCCGAAAAGAGAACGGGTCCAAAGTCTTAAA 1688554 36 100.0 36 .................................... TGCTTCGTCATGCTCGACCTCCTTCGGGGTGTTCAG 1688626 36 100.0 36 .................................... TGCTTCGTCATGCTCGACCTCCTTCGGGGTGTTCAG 1688698 36 100.0 36 .................................... TTTGATTTTTTCCTGATCTACTTTAAAGGCATTGGC 1688770 36 100.0 37 .................................... TTCTGCAATTGAGATTTGGCAACACCTTTAATCTTGT 1688843 36 100.0 37 .................................... GCGCGAATAGCCTTGTCCCAATCGAACTGGTTCTTGT 1688916 36 100.0 37 .................................... GCGCGAATAGCCTTGTCCCAATCGAACTGGTTCTTGC 1688989 36 100.0 35 .................................... GCGGCGTAGGCCCGCTCGAAGTTGGCAATCGCTTT 1689060 36 100.0 37 .................................... TTCCCGGTAATCCGATGGGGCTGGCGCAGGATCACGG 1689133 36 80.6 0 .............T...........A...CC.TA.G | ========== ====== ====== ====== ==================================== =========================================== ================== 70 36 99.7 37 GACGGAGACAGAGCCCCGATTTGAGGGGATTGAGAC # Left flank : GTGACTGGGGGTCTGGTCTCTCCGGCATGGAATCAATCAACGGAGCACTTCGCGATGCTATCGATCGTCGTTTTGTGCCTTGCCTTTGGGCCGAGCGCCTGTCGCCGGGTTCTCGTAGACACCCCGATATGGAACAGAGTGTCAATTCATACCCTTCCTTTACACCATCGAAAGAAACCGCAACCATCCTCCACAACAACAATGCCGGCAAAAATAGGAGAATGCTTCCCCCGGCGCTTTCCCCGGCCGTGTCGTGCGTGGTTCCGCGACCGCATTTCCGCCCACCTGGCGTTCGCGAACCATGCAAAGGTCAACCTGTTGATTTTACTCACCGGCGGGCAAACACATGCGCGGATTCGAGAAGATGTTGAATGATCCAATACTTTTCACTTCGCTGGCGACACCGGAAGGCGTATTCTTGTACTCGGCGTCAGAAAAACGGGGATATGGTCGGAATCGGCCTCGAAAGCCCTTGAGCAGCCGCGGTTTGCAGTGCAAGA # Right flank : GCAAGCCCTTTCGGCTCGTTGTCAGCTTCACGGGAATGTAGAGTAAATGTTTCCGGGTTCGGGGTTCAGCCGAAACACCGCGCGGGCCTTGCTTGGAAACACCCGGCAACGAACCCGGGCTCATGGGCGTGAACGAATGTGGTGGGATTCAAAAAATGAGCCCTCCCCCGGAAAGTCTTGTGCTTCCCGGGGAGGGCCCGCTATCAGGTCGGGGTTTGTCGTTTCAACTTACCTGTGGCCGCGTTATCGCTAACACCCGCGTTATCACCCGCAGCCGTACTGTCGTTCAGAGCCGCGTTATCGCTCGCATGCCGTCAAGGTTTCTCATCAGCCTTTTTCTTGCCGGCTGGGCCCTGCTGCTGCCCATGCTGGGGCTGCTGCCCCTGCTGAGGCCTTGGCTGCTGAACGCCCTGCTGCTGTCTTGGCTGCTGAGCCCCGGGCCTCTGTTCCTGCATTTGGGGCCTGCGTTGTTCCTGAACCTGGGGCCGTCGCTGTTCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGGAGACAGAGCCCCGATTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 3478587-3478734 **** Predicted by CRISPRDetect 2.4 *** >NC_008554.1 Syntrophobacter fumaroxidans MPOB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 3478587 26 100.0 35 .......................... GCTCCCCAACGTCCACGAAGAGCCGCGCGGGAAGT 3478648 26 100.0 35 .......................... ACGCTTCAGTACAAAGTCCAAAGACTCGCACTAAA 3478709 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 3 26 100.0 36 CTCTCGCGCCTGCGCGTGGACCGAAA # Left flank : GCGACCAGCGGGCCGCCGCCGGCCTGGACCTGGCGGTCTACGACACCTACACGGGAACCACCCGGCCGGTGAACACGCTCTCCGGCGGCGAAAGCTTCCTCTCCTCCCTCGCCATGGCCCTGGGCCTGGCCGACGTCGTCCGGGCCTACGCCGGGGGAATCCGGCTGGAAACCATCTTCGTGGACGAGGGCTTCGGCAGCCTCGACCAGGAATCCCTGGACCTCGCCTTTCAGACGCTCGTCGATCTTCAGGAGGGCAACCGGCTGGTGGGAATCATTTCGCACGTGCCGGAACTCCGGGAACGCGTCGACGCGCGGCTGGAAGTCATCCCGGGCATCAGGGGCAGCGATGCGCGGTTCGTTCTCTGATGCCGGAGAATGTTCGGGAAAGACGCGGGCGGGGATAAAGCGCGCCCTTACGTACCGATGTGCCTGTCAGATATACAAGGGGAGGGCTTTATGCCCTCCCGCCCAATGCACTCAGCTTGAACGCAACCTGGT # Right flank : AACCCGGTTGCGTCGGAATGCAATACGTCACGGGGGGAACGCCCGCCGGGCGCGCCTCACCCTTCCGGATCTAGACCTGCCCCGGAATGCGAAGAAAAGCGTTAACCGTCATCGCGACACAAACCGGAAGCCGCCGGTCCGTTCAAGCTCTTCCGAACCGGAAGCTATATTGTTGCGGCGATGCGCGCTTGTTCGATCGACACCGAGTCAAGTTTATCCGCCTTGTCGTCACGCTCACCTTTGTTCACTCCATAATACTTGACATTTTTGCTTCAATACGTGATACCATTTCATCAATATTCTCCATTTGATTGCCGGTCGGCAATGATTTTCATGTGGTATTCGCTGACCGCTTTAAGATAATTCCATCCAACGTGTACAGCCTATGGCTTCATTCATTGTAAACCGCTTCCAATCGAGAGTCGCACTATTCCACATTCGATGCTCTATGTCGGCTGGTGATGCAGAGAGCAGCCCGTGTTCGATCAATATGAGAGGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCGCGCCTGCGCGTGGACCGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 3489022-3493873 **** Predicted by CRISPRDetect 2.4 *** >NC_008554.1 Syntrophobacter fumaroxidans MPOB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3489022 29 100.0 32 ............................. TTCCTTCCTGCCATCCACTTGTCAACGTCCTC 3489083 29 100.0 32 ............................. GCCATTCGCGTTTATCTCCTCATTGAAAGTGA 3489144 29 100.0 32 ............................. GCATATCAACGCAAGGGGGGGAGCAAGTGAGA 3489205 29 100.0 33 ............................. TACGGCTACGACCGGATTAATGACGCTGACGTC 3489267 29 100.0 32 ............................. GCCGGAGCTCATCCGGGCCGCATCGGAAGTGC 3489328 29 100.0 32 ............................. ACGACTCACACCCCTTTAGCTTGAATGTCTCA 3489389 29 100.0 32 ............................. CTTCCTGTCGGTCCATGGCTATGTCCACTCAA 3489450 29 100.0 32 ............................. GTCTGGTTCGGTGGGGTGTGGTCTGGTCCGGT 3489511 29 100.0 32 ............................. TTGTGGAGGCTGAAGTGGGCGACGACGGTAAA 3489572 29 100.0 32 ............................. TTTCGTTCGGCATATTCGAGTTGCCTTGCGAG 3489633 29 100.0 32 ............................. CAGTTTAACCAGTTGAGCAAATATTTTCCACG 3489694 29 100.0 32 ............................. AGCTATTCCCCGGACCCCGCGAAAATCGAGGA 3489755 29 100.0 32 ............................. TCCGATGAGCACGCAGGTATCAACCAGCGAGG 3489816 29 100.0 32 ............................. TGGACAGGATGAAGAGCAGAACCTTCTGCCGG 3489877 29 96.6 32 ............................A GCCAATGTGAACCGCATCTTTTTGATTCTATC 3489938 29 100.0 32 ............................. GGAACCTCCCAGACACCCCGGCCAGTTTCCGG 3489999 29 100.0 32 ............................. GCGGCCGTCCGGGGCACGGAAAATCTTCCCGG 3490060 29 100.0 32 ............................. ATCCTTGAGAACGTCCCTCGTGGTGGCGGTAC 3490121 29 100.0 32 ............................. ATCCCTCAGCCATGGTTTGACGCCGAACACGA 3490182 29 100.0 32 ............................. GCTCCCCGGCCCGGCGCAACGGAACGCCACGA 3490243 29 100.0 32 ............................. GGACAGGATGCCCCATCAGGAAGGGCACCCAG 3490304 29 100.0 32 ............................. TATGGCTACGACCGTATTAACGACGTGGATGT 3490365 29 100.0 32 ............................. AGAACGCCCCGGCAAGGGGCACAACTAAGAAG 3490426 29 100.0 32 ............................. TTGGGCTGTCCACTGTCTCTTCTCCGGGAAAC 3490487 29 100.0 32 ............................. TTCGTCATTCCATTGAATCCGAAGCTGCGGCT 3490548 29 100.0 32 ............................. ACGGTCGGCCAGCCAACAATATCCCCTTCGGT 3490609 29 100.0 32 ............................. TGCTTGGCGATATGGAGGCAAAGATCGCCGGT 3490670 29 100.0 32 ............................. CAGTGTTATTTCATTGCCTACGGGCAGGCGCT 3490731 29 100.0 32 ............................. GGCGAACTACAAAAACCAACAGTAGGAGGATC 3490792 29 100.0 32 ............................. AAAGACCGTGTGCCCTATGACCTGTGGGCGAA 3490853 29 100.0 32 ............................. CCGGATTTCATCCGCACCGTTCCGAGATATGC 3490914 29 100.0 32 ............................. TGCTTGGCGATATGGAGGCAAAGATCGCCGGT 3490975 29 100.0 32 ............................. ATCATCAATTCACGGGGAAAGTCCTTACCGTG 3491036 29 100.0 32 ............................. ACCACGTCCCAGGGGAACCCGGGGTTGTGGGT 3491097 29 100.0 32 ............................. CTCCTGCGCGCAATCAGAGACCAGGCCGAGCA 3491158 29 100.0 32 ............................. TCGAGCGATTTGGCCTGGAAGCAACCCCGGCA 3491219 29 100.0 32 ............................. TTCATCCAAAACATTCCGTTGAGTGGCTTTCG 3491280 29 100.0 32 ............................. TTGCCGTTCCGGGGATGAATCAATAATTCCGA 3491341 29 100.0 32 ............................. GAACAAACAACCCAGATGTGCTGTTATGATGG 3491402 29 100.0 32 ............................. ATTGTTCGCTGCCACCCCAACCGCCACCACAA 3491463 29 100.0 32 ............................. ACGCCTTGGTATATATGGTCTGCTGCTTCGGG 3491524 29 100.0 32 ............................. ATTGTTCGCTGCCACCCCAACCGCCACCACAA 3491585 29 100.0 32 ............................. ACGCCTTGGTATATATGGTCTGCTGCTTCGGG 3491646 29 100.0 32 ............................. CTGTCCTATCAGCACTACCTGGAGGAGAAGTG 3491707 29 100.0 32 ............................. ACGAGTAAAATAGATAGCCCTGGTCGGCTTGA 3491768 29 100.0 32 ............................. CCCGTCTATCACCAGGGGCGGATTGTCGGGTA 3491829 29 100.0 32 ............................. TAATCCGCGATGTGACGACCTGCGGAACAAGA 3491890 29 100.0 32 ............................. GATGCCGTCGGGGTTCAAATTGGCGTCGCCGG 3491951 29 100.0 32 ............................. TCCATTACGTCGCTAATAATCATTCTTCTCTT 3492012 29 100.0 32 ............................. GACTGTATAGTTCCTCGACTTCAGATCCATCT 3492073 29 100.0 32 ............................. GACTGTATAGTTCCTCGACTTCAGATCCATCT 3492134 29 100.0 32 ............................. TCATGGCTGGCATCCAGATCTACCAGGAGCGG 3492195 29 100.0 32 ............................. CCCGAATACGTGCGCGACCTCGTGGCACTGCA 3492256 29 100.0 32 ............................. CGCAGAGGAGGTGGACAATGGCTGATCGCGTG 3492317 29 100.0 33 ............................. GGTTTGAGGGGGCGTCCTGGGCGAAGGTGACCC 3492379 29 100.0 32 ............................. GATTGCACGGCGGACCCGGTAACCGGCGGCAA 3492440 29 100.0 32 ............................. CCATCGACGCCTATTTTGAGGAGCAGGTCTCA 3492501 29 100.0 32 ............................. AAAGGCAATCATTGAATATCTTGGATTGAAAT 3492562 29 100.0 32 ............................. CTCACCGGCACCATGCGTGAGCAGTACGAAGT 3492623 29 100.0 32 ............................. ACCCCGTGGCCGACCAGGTGCAGGGATTCCGG 3492684 29 100.0 32 ............................. GCTCGGACGTGGTGGATGGCAAACCCAATGAA 3492745 29 100.0 32 ............................. CCGCTCTCCCGGAGCACCTTCCCCTCGGAACT 3492806 29 100.0 32 ............................. TGCGTCCTCTGGACTGGACGCGAGAAATTGCT 3492867 29 100.0 32 ............................. GCGTCATTCCCTGGCGGAAACCCTGGAAGGGC 3492928 29 100.0 32 ............................. GGGATATCGCATTCGTCCCGGCAGTGCTCCCG 3492989 29 100.0 32 ............................. ACCCCGTGGCCGATCAAGTCCAGGGATTCCGG 3493050 29 100.0 32 ............................. CGGCCCGGCGAGCTCCCAGGCCACGTGCCGTA 3493111 29 100.0 32 ............................. TTGCGCCGCTTTTTGCGCCATGCCCTCCAGGC 3493172 29 100.0 32 ............................. AAAAAGCAGCAACTGAGCGATTTGGAGGCGAA 3493233 29 100.0 32 ............................. GGTTGGTTTTGTCCCCGGATTCGTTCCGGGAC 3493294 29 100.0 32 ............................. GGTTGGTTTTGTCCCCGGATTCGTTCCGGGAC 3493355 29 100.0 32 ............................. AGAGCCGCTGCTGTCCTATCGTATGCGCTGCT 3493416 29 100.0 32 ............................. CATCATATCCGCCCAGCGTCAAAATCGCTTCG 3493477 29 100.0 32 ............................. AGATCGAAAACGCCATTCTCGAGTATCTCCGG 3493538 29 100.0 33 ............................. TGTGAAACATGCACCCAGCACGTCCAGGGGAAA 3493600 29 100.0 32 ............................. AAAATAATCGAGACCGGACCACTTCCGGACCA 3493661 29 100.0 32 ............................. GGACTTGTCACCGAAAAGTACCTGACCGTCGA 3493722 29 100.0 32 ............................. CCCCGGCGCGGACGTCCGAGAAAGGGATAACC 3493783 29 100.0 33 ............................. CACATCGATGACCCTCGCGTCATCACCTACGAG 3493845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 100.0 32 GTGTTCCCCACGCGGGTGGGGATGAACCG # Left flank : ACCATTTTGAACGCAGGCGGGCTGAATCGCCCCGATCCGCCGGAAGATTCCGTACCGCCGGCTATCCCGAACAAGGAGCAATCAGGCGATGCTGGTCATCGTGGTTGAAAACGCTCCTGCACGTTTGCGGGGAAGATTGGCCGTCTGGCTGCTCGAAATCCGTGCGGGAGTGTATGTTGGAGACTACTCCAGGCGTGTGAGAGAGATGATCTGGAAGCAGGTCGAGCTCGGAATAACCGAAGGAAACGCTGTTATGGCTTGGAGCACGAACAGCGAGAGCGGTTTCGACTTCTTGACCTTCGGGCAGAACAGACGCGTGCCATGCGAACTGGAAGGGATAAAGCTTGTCTCATTCCTTCCGTCAAATGAGACAGAGGAACAAAAATGTGCCATTTCTGCCACAAATCGCGAGCTCAGCGAAGGCCATCCAAATGGCAACGACAGCTGGTAAGTGTCTGCGTGCTCGAAAATAAACGTCATATCAAAGTGTTGGAAGAAGT # Right flank : GGCCCATGAATGTCAATACGAATTGAAAATTTACCCTTTTTACGAATTGAATTTTTACCCCCCCCTCGGTTTTGGTGACTGACTTTGGGAACAGGCCCCTTTGATTTTGGTTGAGAAATGAAGGGCGGAGCGGAGCGCCGACGCAGCGTGGAAACCGACTTGAGGGAAGCGGAGGCGCGGCGGCGTCCGGGATCGAGAAAGTGGCCCTCCTGCGGGAGTGCCGCTTCGATCCCGCAAGACGACGGCAGCGCAGCCGCGGAGCGAGTCGGAGGTTCCGCGTGAGTCGAGGCGCTCGGCGCAGCCCGTGTCACGTTTGCTCCAGTTCGGGGCTTTGAAGAAGTCCGGCTTTGACCTTTTCTTTGAGCCGGTACGAGTTGCCTTTGATGTTGACCGTTGTGGAATGATGCAGGATGCGGTCCAGGATGGCGGTGGCGATCACCGTGTCGCCGAAGATTTCATTCCACTGGCCGAAGCTGCGATTGGAGGTGACGATCAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGGGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //